diff --git a/.cspell.json b/.cspell.json index 1a718299..9b804ae7 100644 --- a/.cspell.json +++ b/.cspell.json @@ -31,7 +31,6 @@ ".pre-commit-config.yaml", ".prettierignore", ".readthedocs.yml", - ".taplo.toml", ".vscode/*", "CITATION.cff", "docs/adr/*/*", diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 1923a208..5cd9c2c2 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -4,6 +4,8 @@ ci: autoupdate_schedule: quarterly skip: - check-jsonschema + - tombi-format + - tombi-lint - ty - uv-lock @@ -14,21 +16,9 @@ repos: - id: check-useless-excludes - repo: https://github.com/ComPWA/policy - rev: 0.8.9 + rev: 0.9.0 hooks: - id: check-dev-files - args: - - --doc-apt-packages=graphviz - - --github-pages - - --no-pypi - - --repo-name=compwa.github.io - - --repo-title=ComPWA Organization - - --type-checker=ty - - id: colab-toc-visible - - id: fix-nbformat-version - - id: remove-empty-tags - - id: set-nb-display-name - - id: strip-nb-whitespace - repo: https://github.com/kynan/nbstripout rev: 0.9.1 @@ -58,8 +48,17 @@ repos: metadata.varInspector metadata.vscode + - repo: https://github.com/ComPWA/nbhooks + rev: 0.0.1 + hooks: + - id: colab-toc-visible + - id: fix-nbformat-version + - id: remove-empty-tags + - id: set-nb-display-name + - id: strip-nb-whitespace + - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.15.10 + rev: v0.15.21 hooks: - id: ruff-check args: [--fix] @@ -92,24 +91,20 @@ repos: .*\.svg )$ + - repo: https://github.com/tombi-toml/tombi-pre-commit + rev: v1.2.0 + hooks: + - id: tombi-format + - id: tombi-lint + args: [--error-on-warnings] + - repo: https://github.com/ComPWA/prettier-pre-commit rev: v3.8.1 hooks: - id: prettier - - repo: https://github.com/ComPWA/taplo-pre-commit - rev: v0.9.3 - hooks: - - id: taplo-format - - - repo: https://github.com/pappasam/toml-sort - rev: v0.24.4 - hooks: - - id: toml-sort - args: [--in-place] - - repo: https://github.com/python-jsonschema/check-jsonschema - rev: 0.37.1 + rev: 0.37.4 hooks: - id: check-jsonschema name: Check CITATION.cff @@ -122,7 +117,7 @@ repos: pass_filenames: false - repo: https://github.com/streetsidesoftware/cspell-cli - rev: v10.0.0 + rev: v10.0.1 hooks: - id: cspell language_version: 25.9.0 @@ -148,17 +143,13 @@ repos: docs/favicon.ico )$ - - repo: local + - repo: https://github.com/astral-sh/ty-pre-commit + rev: v0.0.59 hooks: - id: ty - name: ty - entry: ty check - args: [--no-progress, --output-format=concise] - require_serial: true - language: system - types_or: [python, pyi, jupyter] + args: [--group=types, --no-default-groups] - repo: https://github.com/astral-sh/uv-pre-commit - rev: 0.11.6 + rev: 0.11.28 hooks: - id: uv-lock diff --git a/.taplo.toml b/.taplo.toml deleted file mode 100644 index 8f9cb0fd..00000000 --- a/.taplo.toml +++ /dev/null @@ -1,19 +0,0 @@ -[formatting] -align_comments = false -align_entries = false -allowed_blank_lines = 1 -array_auto_collapse = false -array_auto_expand = true -array_trailing_comma = true -column_width = 88 -compact_inline_tables = true -indent_string = " " -reorder_arrays = true -reorder_keys = true - -[[rule]] -include = ["**/pyproject.toml"] -keys = ["tool.poe.tasks"] - -[rule.formatting] -reorder_arrays = false diff --git a/.vscode/extensions.json b/.vscode/extensions.json index 39597a39..cb4dd067 100644 --- a/.vscode/extensions.json +++ b/.vscode/extensions.json @@ -20,7 +20,7 @@ "soulcode.vscode-unwanted-extensions", "stkb.rewrap", "streetsidesoftware.code-spell-checker", - "tamasfe.even-better-toml", + "tombi-toml.tombi", "yzhang.markdown-all-in-one" ], "unwantedRecommendations": [ @@ -35,6 +35,7 @@ "ms-python.pylint", "ms-python.vscode-pylance", "ms-toolsai.vscode-jupyter-slideshow", + "tamasfe.even-better-toml", "travisillig.vscode-json-stable-stringify", "tyriar.sort-lines" ] diff --git a/.vscode/settings.json b/.vscode/settings.json index d0454807..150993f5 100644 --- a/.vscode/settings.json +++ b/.vscode/settings.json @@ -20,6 +20,9 @@ "editor.defaultFormatter": "charliermarsh.ruff", "editor.rulers": [88] }, + "[toml]": { + "editor.defaultFormatter": "tombi-toml.tombi" + }, "[yaml]": { "editor.defaultFormatter": "esbenp.prettier-vscode" }, diff --git a/docs/conf.py b/docs/conf.py index e690b40d..8b022dfc 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -169,6 +169,7 @@ "https://via.placeholder.com", # irregular timeout "https://www.andiamo.co.uk/resources/iso-language-codes", # 443, but works "https://www.bookfinder.com", + "https://www.guru99.com/types-of-software-testing.html", "https://www.mathworks.com/products/matlab.html", "https://www.npmjs.com/package", r"https://github.com/ComPWA/RUB-EP1-AG/.*", # private diff --git a/docs/index.md b/docs/index.md index d571e738..b65b298c 100644 --- a/docs/index.md +++ b/docs/index.md @@ -37,7 +37,7 @@ Each of these libraries come with **interactive and interlinked documentation** QRules ``` -[![Documentation build status](https://readthedocs.org/projects/qrules/badge/?version=latest)](https://qrules.readthedocs.io) +[![Documentation build status](https://app.readthedocs.org/projects/qrules/badge/?version=latest)](https://qrules.readthedocs.io) [![10.5281/zenodo.5526360](https://zenodo.org/badge/doi/10.5281/zenodo.5526360.svg)](https://doi.org/10.5281/zenodo.5526360) [![PyPI package](https://img.shields.io/pypi/pyversions/qrules)](https://pypi.org/project/qrules) [![Conda package](https://anaconda.org/conda-forge/qrules/badges/version.svg)](https://anaconda.org/conda-forge/qrules)
@@ -54,7 +54,7 @@ Rule-based particle reaction problem solver on a quantum number level AmpForm ``` -[![Documentation build status](https://readthedocs.org/projects/ampform/badge/?version=latest)](https://ampform.readthedocs.io) +[![Documentation build status](https://app.readthedocs.org/projects/ampform/badge/?version=latest)](https://ampform.readthedocs.io) [![10.5281/zenodo.5526648](https://zenodo.org/badge/doi/10.5281/zenodo.5526648.svg)](https://doi.org/10.5281/zenodo.5526648) [![PyPI package](https://img.shields.io/pypi/pyversions/ampform)](https://pypi.org/project/ampform) [![Conda package](https://anaconda.org/conda-forge/ampform/badges/version.svg)](https://anaconda.org/conda-forge/ampform)
@@ -71,7 +71,7 @@ Automatically generate symbolic amplitude models for Partial Wave Analysis TensorWaves ``` -[![Documentation build status](https://readthedocs.org/projects/tensorwaves/badge/?version=latest)](https://tensorwaves.readthedocs.io) +[![Documentation build status](https://app.readthedocs.org/projects/tensorwaves/badge/?version=latest)](https://tensorwaves.readthedocs.io) [![10.5281/zenodo.5526650](https://zenodo.org/badge/doi/10.5281/zenodo.5526650.svg)](https://doi.org/10.5281/zenodo.5526650) [![PyPI package](https://img.shields.io/pypi/pyversions/tensorwaves)](https://pypi.org/project/tensorwaves) [![Conda package](https://anaconda.org/conda-forge/tensorwaves/badges/version.svg)](https://anaconda.org/conda-forge/tensorwaves)
diff --git a/docs/symbolics.ipynb b/docs/symbolics.ipynb index 7fab1135..921e3296 100644 --- a/docs/symbolics.ipynb +++ b/docs/symbolics.ipynb @@ -321,7 +321,7 @@ "cell_type": "markdown", "metadata": {}, "source": [ - "Internally, SymPy expressions are built up by applying mathematical operations to algebraic objects, such as symbols and \n", + "Internally, SymPy expressions are built up by applying mathematical operations to algebraic objects, such as symbols and\n", "numbers. In this example, we see how the Breit-Wigner function is built up from four symbols, a complex number, and a few integers. The resulting expression can be visualized as an **expression tree** of fundamental mathematical operations." ] }, @@ -669,7 +669,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.13.12" + "version": "3.13.14" } }, "nbformat": 4, diff --git a/pyproject.toml b/pyproject.toml index 6129d895..c2c1b885 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,22 +1,16 @@ -[build-system] -build-backend = "setuptools.build_meta" -requires = [ - "setuptools>=61.2", - "setuptools_scm", -] - [project] -authors = [{name = "Common Partial Wave Analysis", email = "compwa-admin@ep1.rub.de"}] -description = "Source code for the ComPWA Organization pages" -dynamic = ["version"] -license = {file = "LICENSE"} -maintainers = [{email = "compwa-admin@ep1.rub.de"}] name = "compwa-github-io" +description = "Source code for the ComPWA Organization pages" requires-python = "~=3.13.0" +license = "Apache-2.0" +license-files = ["LICENSE"] +authors = [{ name = "Common Partial Wave Analysis", email = "compwa-admin@ep1.rub.de" }] +maintainers = [{ email = "compwa-admin@ep1.rub.de" }] +dynamic = ["version"] [project.readme] -content-type = "text/markdown" file = "README.md" +content-type = "text/markdown" [project.urls] Documentation = "https://compwa.github.io" @@ -26,10 +20,10 @@ Source = "https://github.com/ComPWA/compwa.github.io" [dependency-groups] dev = [ "ruff", - {include-group = "doc"}, - {include-group = "jupyter"}, - {include-group = "style"}, - {include-group = "test"}, + { include-group = "doc" }, + { include-group = "jupyter" }, + { include-group = "style" }, + { include-group = "test" }, ] doc = [ "myst-nb", @@ -46,8 +40,8 @@ doc = [ "sphinx-reredirects", "sphinx-thebe", "sphinx-togglebutton", - "sphinxcontrib-bibtex >=2", - {include-group = "notebooks"}, + "sphinxcontrib-bibtex>=2.0", + { include-group = "notebooks" }, ] jupyter = [ "jupyter-ruff", @@ -58,7 +52,7 @@ jupyter = [ "jupyterlab-quickopen", "python-lsp-ruff", "python-lsp-server", - {include-group = "notebooks"}, + { include-group = "notebooks" }, ] notebooks = [ "black", @@ -71,35 +65,43 @@ style = [ "attrs", "nbformat", "ty", - {include-group = "notebooks"}, - {include-group = "types"}, + { include-group = "types" }, ] -test = [ - "jupyter", +test = ["jupyter"] +types = [ + "attrs", + "sphinx-api-relink", + { include-group = "notebooks" }, ] -types = ["sphinx-api-relink"] -[tool.setuptools] -include-package-data = false +[build-system] +requires = [ + "setuptools>=61.2", + "setuptools_scm", +] +build-backend = "setuptools.build_meta" -[tool.setuptools_scm] -write_to = "version.py" +[tool.compwa.policy] +doc-apt-packages = "graphviz" +repo-name = "compwa.github.io" +repo-title = "ComPWA Organization" + +[tool.compwa.policy.github] +github-pages = true +no-pypi = true + +[tool.compwa.policy.python] +type-checker = ["ty"] [tool.poe.executor] isolated = true no-group = "dev" type = "uv" -[tool.poe.tasks.all] -help = "Run all continuous integration (CI) tasks locally" -ignore_fail = "return_non_zero" -sequence = [ - "docnb-force", - "linkcheck", - "style", -] +[tool.poe.groups.doc] +heading = "Documentation" -[tool.poe.tasks.doc] +[tool.poe.groups.doc.tasks.doc] cmd = """ sphinx-build \ --builder=html \ @@ -109,11 +111,15 @@ sphinx-build \ docs/ \ docs/_build/html/ """ -env = {PYTHONWARNINGS = "", TF_CPP_MIN_LOG_LEVEL = "3", ZFIT_DISABLE_TF_WARNINGS = "1"} -executor = {group = "doc"} +executor = { group = "doc" } help = "Build documentation and API" -[tool.poe.tasks.doclive] +[tool.poe.groups.doc.tasks.doc.env] +PYTHONWARNINGS = "" +TF_CPP_MIN_LOG_LEVEL = "3" +ZFIT_DISABLE_TF_WARNINGS = "1" + +[tool.poe.groups.doc.tasks.doclive] cmd = """ sphinx-autobuild \ --builder=html \ @@ -136,31 +142,25 @@ sphinx-autobuild \ docs/ \ docs/_build/html/ """ -executor = {group = "doc", with = "sphinx-autobuild"} +executor = { group = "doc", with = "sphinx-autobuild" } help = "Set up a server to directly preview changes to the HTML pages" -[tool.poe.tasks.docnb] -env = {EXECUTE_NB = "yes"} +[tool.poe.groups.doc.tasks.docnb] +env = { EXECUTE_NB = "yes" } help = "Build documentation and API with cached notebook execution" sequence = ["doc"] -[tool.poe.tasks.docnb-force] -env = {FORCE_EXECUTE_NB = "yes"} +[tool.poe.groups.doc.tasks.docnb-force] +env = { FORCE_EXECUTE_NB = "yes" } help = "Build documentation and API with notebook execution (no cache)" sequence = ["doc"] -[tool.poe.tasks.docnblive] -env = {EXECUTE_NB = "yes"} +[tool.poe.groups.doc.tasks.docnblive] +env = { EXECUTE_NB = "yes" } help = "Set up a server to directly preview changes to the HTML pages with cached notebook execution" sequence = ["doclive"] -[tool.poe.tasks.lab] -args = [{name = "paths", default = "", positional = true}] -cmd = "jupyter lab ${paths}" -executor = {group = "jupyter"} -help = "Launch Jupyter Lab" - -[tool.poe.tasks.linkcheck] +[tool.poe.groups.doc.tasks.linkcheck] cmd = """ sphinx-build \ --builder=linkcheck \ @@ -168,21 +168,52 @@ sphinx-build \ docs/ \ docs/_build/linkcheck/ """ -env = {PYTHONWARNINGS = ""} -executor = {group = "doc"} +env = { PYTHONWARNINGS = "" } +executor = { group = "doc" } help = "Check external links in the documentation (requires internet connection)" -[tool.poe.tasks.nb] -args = [{name = "paths", default = "docs", multiple = true, positional = true}] +[tool.poe.groups.notebook] +heading = "Notebooks" + +[tool.poe.groups.notebook.tasks.lab] +args = [{ name = "paths", default = "", positional = true }] +cmd = "jupyter lab ${paths}" +executor = { group = "jupyter" } +help = "Launch Jupyter Lab" + +[tool.poe.groups.notebook.tasks.nb] +args = [{ name = "paths", default = "docs", multiple = true, positional = true }] cmd = "pytest --nbmake --nbmake-timeout=0 ${paths}" -executor = {group = "notebooks", with = "nbmake"} +executor = { group = "notebooks", with = "nbmake" } help = "Run all notebooks" +[tool.poe.tasks.all] +help = "Run all continuous integration (CI) tasks locally" +ignore_fail = "return_non_zero" +sequence = [ + "style", + "linkcheck", + "docnb-force", +] + [tool.poe.tasks.style] cmd = "pre-commit run --all-files" -executor = {group = "style"} +executor = { group = "style" } help = "Perform all linting, formatting, and spelling checks" +[tool.poe.tasks.upgrade] +executor = { type = "simple" } +help = "Upgrade lock files" +parallel = ["_upgrade-precommit", "_upgrade-uv"] + +[tool.poe.tasks._upgrade-precommit] +cmd = "pre-commit autoupdate -j8" +executor = { type = "simple" } + +[tool.poe.tasks._upgrade-uv] +cmd = "uv lock --upgrade" +executor = { type = "simple" } + [tool.pytest.ini_options] addopts = [ "--color=yes", @@ -257,7 +288,7 @@ select = ["ALL"] task-tags = ["cspell"] [tool.ruff.lint.flake8-builtins] -builtins-ignorelist = ["display"] +ignorelist = ["display"] [tool.ruff.lint.flake8-comprehensions] allow-dict-calls-with-keyword-arguments = true @@ -336,18 +367,26 @@ split-on-trailing-comma = false [tool.ruff.lint.pydocstyle] convention = "google" 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