blast_python/docker-compose.yml at main · genouest/blast_python · GitHub

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services:
  blast:
    build: .
    image: blast-server:latest
    ports:
      - "8000:8000"
    environment:
      JOBS_METHOD: slurm
      # Create/run as a user with the provided uid/gid (shared with the compute
      # nodes so jobs run under the same user). Leave empty for defaults.
      UID:
      GID:
      APP_USER: blast
      APP_GROUP: blast
      # Submit jobs as the same user (X-SLURM-USER-NAME impersonation; the
      # SLURM_JWT token must belong to a user with SlurmUser/admin rights).
      SLURM_USER: blast
      SLURM_REST_URL: http://slurmctld:6820
      SLURM_API_VERSION: v0.0.40
      SLURM_JWT_FILE: /run/secrets/slurm_jwt
      # SLURM_JWT: <your token>   (or mount a token file and set SLURM_JWT_FILE)
      SLURM_PARTITION:
      SLURM_QOS:
      SLURM_ACCOUNT:
      SLURM_NATIVE:
      # Custom templates / static overrides (see the volumes below). Provide a
      # custom layout.html and/or a custom stylesheet without rebuilding the
      # image. Example values (keep empty unless you mount the dirs):
      TEMPLATES_OVERRIDE_DIR: /srv/blast/override/templates
      STATIC_OVERRIDE_DIR: /srv/blast/override/static
      CUSTOM_CSS: custom.css
      JOBS_WORK_DIR: /tmp/
      JOBS_SCHED_NAME: blast
      CDD_DELTA_PATH:
      PRE_CMD:
      # DATABASE_URL: sqlite:////srv/blast/blast.db
      ADMIN_EMAIL: admin@blast-server
      ADMIN_NAME: Blast admin
      SMTP_HOST:
      SMTP_PORT: "25"
      SMTP_USER:
      SMTP_PASS:
      SMTP_USE_TLS: "false"
    volumes:
      - ./config/banks.yml:/srv/blast/config/banks.yml:ro
      - ./config/links.yml:/srv/blast/config/links.yml:ro
      # Optional overrides: mount a directory with a custom layout.html and/or
      # a custom stylesheet. See TEMPLATES_OVERRIDE_DIR / STATIC_OVERRIDE_DIR /
      # CUSTOM_CSS above. Uncomment to enable:
      # - ./override/templates:/srv/blast/override/templates:ro
      # - ./override/static:/srv/blast/override/static:ro
    secrets:
      - slurm_jwt

secrets:
  slurm_jwt:
    file: ./slurm.jwt