chore: Pin actions using hashes by Czaki · Pull Request #1458 · 4DNucleome/PartSeg

Czaki · 2026-09-08T13:39:39Z

Summary by Sourcery

Pin all GitHub Actions workflow dependencies to specific commits to make automation runs reproducible and reduce supply-chain risk.

Enhancements:

Pin GitHub Actions dependencies to immutable commit hashes across testing, security scanning, release, publishing, reporting, and dependency-update workflows while retaining version comments for traceability.

CI:

Improve CI supply-chain reproducibility and security by replacing mutable action tags and branches with verified commit references.

Summary by CodeRabbit

Chores
- Pinned automated workflow actions to immutable version references for more predictable and reproducible builds.
- Updated several workflow action versions, including artifact handling, code analysis, testing, release publishing, and pull request automation.
- Workflow behavior, job logic, and test execution remain unchanged.

sourcery-ai · 2026-09-08T13:39:45Z

Reviewer's Guide

All third-party GitHub Actions referenced by the affected workflows are changed from mutable version tags to immutable commit hashes, with comments documenting the corresponding action versions; workflow behavior and action configuration remain otherwise unchanged.

File-Level Changes

Change	Details	Files
Pin GitHub Actions dependencies to immutable commit hashes while retaining human-readable release annotations.	Pinned artifact upload/download actions across test workflows. Pinned CodeQL, Codecov, environment/setup, GUI, issue-reporting, and pull-request actions. Pinned release and PyPI publishing actions used by the release workflow.	`.github/workflows/base_test_workflow.yml` `.github/workflows/codeql-analysis.yml` `.github/workflows/make_release.yml` `.github/workflows/test_napari_repo.yml` `.github/workflows/test_prereleases.yml` `.github/workflows/tests.yml` `.github/workflows/upgrade-dependencies.yml`

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sonarqubecloud · 2026-09-08T13:40:06Z

Quality Gate passed

Issues
0 New issues
0 Accepted issues

Measures
0 Security Hotspots
0.0% Coverage on New Code
0.0% Duplication on New Code

See analysis details on SonarQube Cloud

sourcery-ai

Hey - I've reviewed your changes and they look great!

Sourcery assessment

Needs a human reviewer. These changes determine the exact third-party code executed by CI, including workflows with GITHUB_TOKEN, CodeQL, issue-creation, and PyPI publishing credentials. If a hash is incorrect or points to compromised code, a workflow run could expose credentials or publish an unintended release; reverting stops future runs but cannot undo credentials already exposed or artifacts already published.

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coderabbitai · 2026-09-08T13:40:57Z

No actionable comments were generated in the recent review. 🎉

ℹ️ Recent review info

⚙️ Run configuration

Configuration used: Path: .coderabbit.yaml

Review profile: CHILL

Plan: Advanced

Run ID: f086fe2c-2705-4fc0-a0a5-8fa9560ea4eb

📥 Commits

Reviewing files that changed from the base of the PR and between 567d9d1 and 015d3c4.

📒 Files selected for processing (7)

.github/workflows/base_test_workflow.yml
.github/workflows/codeql-analysis.yml
.github/workflows/make_release.yml
.github/workflows/test_napari_repo.yml
.github/workflows/test_prereleases.yml
.github/workflows/tests.yml
.github/workflows/upgrade-dependencies.yml

Included review availability: Your plan provides up to 1 included review per hour; 0 remain after this review.

📝 Walkthrough

Walkthrough

The workflows now pin third-party GitHub Actions to immutable commit SHAs. Version annotations identify the referenced releases. Workflow logic and action inputs remain unchanged, except for the setup-qt-libs upgrade from v1 to v1.8.

Changes

GitHub Actions pinning

Layer / File(s)	Summary
Pin workflow actions `.github/workflows/base_test_workflow.yml`, `.github/workflows/codeql-analysis.yml`, `.github/workflows/make_release.yml`, `.github/workflows/test_napari_repo.yml`, `.github/workflows/test_prereleases.yml`, `.github/workflows/tests.yml`, `.github/workflows/upgrade-dependencies.yml`	CI, CodeQL, release, failure-reporting, and dependency-update workflows replace mutable action tags with immutable commit SHAs and version annotations. The `tlambert03/setup-qt-libs` action also changes from v1 to v1.8.

Priority: ⬇️ Low — Defer this workflow-hardening change because it only replaces mutable GitHub Actions tags with pinned commits without changing product behavior.

Estimated code review effort: 1 (Trivial) | ~5 minutes

Merge Risk: ⚪ Minimal · up to 015d3

The workflows retain their existing behavior while using immutable action references, with no identified merge-blocking risk.

🚥 Pre-merge checks | ✅ 5

✅ Passed checks (5 passed)

Check name	Status	Explanation
Docstring Coverage	✅ Passed	No functions found in the changed files to evaluate docstring coverage. Skipping docstring coverage check. Docstring coverage is scoped to functions touched by this diff. Analyzed 0 functions across 0…
Linked Issues check	✅ Passed	Check skipped because no linked issues were found for this pull request.
Out of Scope Changes check	✅ Passed	Check skipped because no linked issues were found for this pull request.
Description Check	✅ Passed	Check skipped - CodeRabbit’s high-level summary is enabled.
Title check	✅ Passed	The title clearly and concisely describes the main change: pinning GitHub Actions to immutable commit hashes.

✨ Finishing Touches 💡 1

🛠️ Fix failing CI checks 💡

Create stacked PR
Commit on current branch

🧪 Generate unit tests (beta)

Create PR with unit tests
Commit unit tests in branch pin_actions

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codecov · 2026-09-08T13:53:32Z

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 92.61%. Comparing base (567d9d1) to head (015d3c4).

Additional details and impacted files

@@             Coverage Diff             @@
##           develop    #1458      +/-   ##
===========================================
+ Coverage    92.59%   92.61%   +0.01%     
===========================================
  Files          211      211              
  Lines        33248    33248              
===========================================
+ Hits         30787    30792       +5     
+ Misses        2461     2456       -5

☔ View full report in Codecov by Harness.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:

❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

chore:Pin actions using hashes

015d3c4

sourcery-ai Bot reviewed Sep 8, 2026

View reviewed changes

Czaki changed the title ~~chore:Pin actions using hashes~~ chore: Pin actions using hashes Sep 8, 2026

Czaki added this to the 0.17.1 milestone Sep 8, 2026

Czaki merged commit 25695e6 into develop Sep 8, 2026
70 of 72 checks passed

Czaki deleted the pin_actions branch September 8, 2026 14:01

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chore: Pin actions using hashes - #1458

chore: Pin actions using hashes#1458
Czaki merged 1 commit into
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pin_actions

Czaki commented Sep 8, 2026 •

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Czaki commented Sep 8, 2026 •

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