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fix(guardrails): GUARD-002 hooks in exec form under an isolated interpreter; root-owned read-only config (abilityai/trinity-enterprise#787) - #3273

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feature/ent787-guardrail-exec-form
Oct 6, 2026
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vybe merged 1 commit into
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feature/ent787-guardrail-exec-form

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Summary

  • The four GUARD-002 hooks (bash-guardrail, file-guardrail, read-only-guard, output-scanner) register in exec form under /usr/bin/env -i HOME=/home/developer /usr/local/bin/python3 -I -S, and the managed file's policy env pins CLAUDE_CODE_SHELL_PREFIX to "". CLAUDE_CODE_SHELL_PREFIX joins execution_env.PROTECTED_KEYS.
  • Read-only config lives in root-owned /opt/trinity/read-only-config.json, written and removed by the backend through a root docker exec (config JSON passed as data). The guard and the Codex runtime read it first. The home copy ~/.trinity/read-only-config.json is still written: pre-Doc completeness: 27 tables in schema.py lack DDL blocks in architecture.md #787 images read it, and it decides only while the root file is missing (after a recreate, before the start-time sync). Retiring it is registered as debt.
  • startup.sh removes a legacy ~/.claude/settings.json only when its SHA-256 matches a version the image shipped there.
  • The image build runs guard002-smoke.py, which executes every hook exactly as the managed file registers it.

Changes

  • docker/base-image/hooks/managed-settings.json, read-only-guard.py, guard002-smoke.py (new), startup.sh, Dockerfile
  • docker/base-image/agent_server/services/execution_env.py, codex_runtime.py
  • src/backend/services/agent_service/read_only.py
  • Tests: tests/unit/test_ent787_guardrail_exec_form.py (+ _ent787_hook_harness.py, fixtures/ent787/); updated test_ent345_guardrail_registration.py, test_read_only_guard.py, test_2036_claude_settings_leak.py
  • Docs: read-only-mode and agent-guardrails flows, architecture/security, agent-runtime, requirements/security, codex-runtime, harness guide, user docs; docs/security-reports/cso-diff-2026-10-06-ent787-guardrail-exec-form.* (0 findings)

Test Plan

  • cd tests && pytest unit/test_ent787_guardrail_exec_form.py -v — 39 passed. Mutation: reverting managed-settings.json / startup.sh / read-only-guard.py / read_only.py / execution_env.py turns it red (16 / 2 / 2 / 6 / 1).
  • Related suites (ent345, ent752 registration, read-only guard, codex runtime, execution env, guardrails, 2036): 337 passed.
  • /verify-local with the agent stage: build+import-smoke, agent-build+import-smoke (GUARD-002 smoke passed in the build), boot+health, test-preflight, agent-exercise, integration — all OK. The unit stage ran separately (below).
  • Built image, real Claude Code 2.1.281 with an adversarial workspace (repo settings env, .env, process env, user site): a Bash call matching a bash_deny pattern is refused by the hook and logged; the same setup on the previous image is not refused.
  • Built image: managed env reaches hooks with CLAUDE_CODE_SHELL_PREFIX / LD_* empty (main file and managed-settings.d drop-in merge key-wise); /health reports guardrails_registration: ok; both shipped legacy settings.json versions are removed at boot.
  • Read-only via PUT /api/agents/{name}/read-only on a verify-stack agent: root file root:root 0444, agent rm refused, a .py edit refused after deleting the home copy; disable removes the root file.
  • Note: pytest unit/ can fail in files this PR does not touch (test_ent477_*, test_ent666_*, others) depending on worker scheduling. Pre-existing test pollution, reproduced on dev without this branch: bug: test_deploy_writable_templates leaves services.* package attributes pointing at re-imported modules — later files in the same xdist worker fail #3272.

Fixes abilityai/trinity-enterprise#787

🤖 Generated with Claude Code

…preter; root-owned read-only config (Abilityai/trinity-enterprise#787)

- managed-settings.json: bash-guardrail, file-guardrail, read-only-guard and
  output-scanner register as `/usr/bin/env -i HOME=/home/developer
  /usr/local/bin/python3 -I -S <hook>` (command + args, timeout 30); policy
  env pins CLAUDE_CODE_SHELL_PREFIX to "".
- execution_env: CLAUDE_CODE_SHELL_PREFIX joins PROTECTED_KEYS.
- Read-only config: the backend writes/removes root-owned
  /opt/trinity/read-only-config.json through a root docker exec (config JSON
  passed as a positional argument). The guard and the Codex runtime read it
  first; the home copy ~/.trinity/read-only-config.json is still written and
  decides only while the root file is missing.
- startup.sh: the legacy ~/.claude/settings.json is removed only when its
  SHA-256 matches a version the image shipped there.
- Dockerfile: build smoke runs every registered hook exactly as the managed
  file registers it.

Mutation evidence: reverting managed-settings.json, startup.sh,
read-only-guard.py, read_only.py or execution_env.py each turns
tests/unit/test_ent787_guardrail_exec_form.py red (16 / 2 / 2 / 6 / 1 failures).

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
@obasilakis
obasilakis force-pushed the feature/ent787-guardrail-exec-form branch from 38b50fb to 1900427 Compare October 6, 2026 14:07
@obasilakis obasilakis added the ui PR touches the frontend UI — triggers Playwright e2e tests label Oct 6, 2026
@obasilakis

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PR Validation Report (/validate-pr)

Lane C (docker/ triggers: base image, hooks, startup.sh). No schema. 27 files, +1166/−124, 1 commit → dev. Rebased onto current dev; the one conflict (tests/registry.json) was resolved as a union.

Check Status Notes
Base / size / commit ✅ dev, 27 files, conventional fix(guardrails): …
Issue link ✅ Fixes abilityai/trinity-enterprise#787 resolves (P1, type-bug). Cross-tracker: set status-in-dev on the issue by hand after merge
Requirements / architecture / flows ✅ requirements/security.md, architecture/security.md, agent-runtime.md, read-only-mode and agent-guardrails flows. ⚠️ agent-guardrails.md carries 6 of the 10 template sections (already so on dev)
Enterprise-doc guard ✅ 0 hits
Security §4.1–4.10 ✅ No keys, emails, IPs, .env or credential files. sk-ant-api03- + "A"*93 is a constructed test fixture. /home/developer/ is the container user path. No mode or symlink changes
Build / config packaging ✅ No new top-level backend directory; no new backend env var
Structural review ✅ Independent reviewer: 1 medium fixed (read-only fail-open across a recreate → home-copy fallback while the root file is missing), 1 low fixed (temp-file cleanup trap), 2 low accepted (no pattern-size cap on an owner-only route; hook timeout 30 s, matching the skill-gate entry). /cso --diff: 0 findings
Merge gate (Tier 1 + lane-C Tier 2) ✅ All PR checks green, incl. regression diff, journey-smoke, e2e, prod-image-smoke, verify-non-root. dev-ci green

Execution coverage (§5.4)

Changed Executed by Live consumer Verdict
managed-settings.json registration each hook run under its registered flags/env (test_guards_keep_their_tables_…, hostile-env tests) + build smoke reads argv from the shipped file Claude Code managed settings ✅
PROTECTED_KEYS += CLAUDE_CODE_SHELL_PREFIX test_the_shell_prefix_pin_is_a_name_dot_env_may_never_set execution_env.build_execution_env ✅
read-only-guard.py precedence test_the_root_file_decides_…, test_the_home_file_decides_only_… (subprocess) Claude Code PreToolUse ✅
codex_runtime._is_read_only precedence test_codex_reads_the_same_precedence _resolve_sandbox_mode ✅
read_only.root_config_command / _sync_root_config argv executed under sh with injection payloads; inject/remove/failure via the fixture inject_read_only_hooks / remove_read_only_hooks ← lifecycle.py, set_read_only_status_logic ✅
startup.sh digest gate block extracted and run under bash against both shipped versions + a modified one container boot ✅

Fix mutation: reverting managed-settings.json / startup.sh / read-only-guard.py / read_only.py / execution_env.py turns test_ent787_guardrail_exec_form.py red (16 / 2 / 2 / 6 / 1).

Beyond CI: /verify-local with the agent stage passed. In the built image, a real Claude Code 2.1.281 Bash call matching a bash_deny pattern is refused with an adversarial workspace in place; on the previous image the same setup is not refused. Read-only through PUT /api/agents/{name}/read-only on a verify-stack agent gives root:root 0444 and the agent's rm is refused.

Known unrelated: full pytest unit/ runs can show order-dependent failures in files this PR does not touch, from existing test pollution: #3272.

Recommendation

Ready for review. Approval from a reviewer other than the author is needed before merge.

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github-actions Bot commented Oct 6, 2026

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⚠️ Live-instance suite skipped — merge conflict against dev.

Resolve by merging dev locally and pushing the result; the next nightly re-tests.

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merge-train: batch validated on train #3279 (green).

@vybe
vybe merged commit 68141d5 into dev Oct 6, 2026
29 checks passed
vybe pushed a commit that referenced this pull request Oct 6, 2026
…665) — mechanical, per the merge-train note on the PR

#3276 and #3273 landed first and both added registry entries;
tests/registry.json rebuilt from the git stages.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
vybe pushed a commit that referenced this pull request Oct 6, 2026
…) — mechanical

#3276, #3273, #3241 and #3275 landed first; tests/registry.json
rebuilt from the git stages.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
vybe pushed a commit that referenced this pull request Oct 6, 2026
 dev merge

The merge-train's registry rebuild for #3275 took the member branch's
list plus dev's new entries, so dev-side EDITS to existing entries were
lost: #3276's trinity-enterprise#792 text on test_files_guardrail_bypass.py
and test_ent596_skill_manager.py was reverted when #3275 landed
(58c7b80). Recomputed with a per-entry three-way merge from dev before
that landing: both descriptions are restored and #3276/#3273's entries
return to their positions. Metadata only; no test behaviour changes.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
vybe added a commit that referenced this pull request Oct 6, 2026
… per subject (#3246, part 1) (#3255)

* feat(operator-queue): platform alert registry and sweep planner (#3246)

C1 of #3246 (one pending row per platform-alert subject). Adds the
stdlib-only leaf services/platform_alerts.py, which both migration tracks
and the service graph will import:

- Kind registry for every in-repo platform emitter, with its id prefix and
  lifetime class: 14 days by default (OPERATOR_PLATFORM_ALERT_LIFETIME_DAYS),
  a fixed 30-day net for edge-triggered kinds with a clear hook, or none for
  the four a person must act on. EXTERNAL_PREFIXES keeps role-drift- out;
  register() takes kinds from outside this module.
- Snooze window after a person ends an alert: 7 days
  (OPERATOR_PLATFORM_ALERT_SNOOZE_DAYS), per the operator's T5 ruling.
- Key belt and subject_for(): "<kind>:<key>", id-shaped keys kept,
  anything else sha256[:16]; event kinds have no subject.
- derive_legacy_subject(): reads every pre-#3246 id shape back to its
  subject, or to "known kind, no subject" when the id does not say which
  condition (git-bloat-, rows missing their context key). Unknown, gate
  and external prefixes are never derived.
- plan_sweep(): pure planner for the upgrade sweep. Keeps the newest
  pending row per (agent, subject) (created_at, then id; NULL oldest; a row
  that already holds a subject keeps it), ends the rest, stamps survivors,
  gives subject-less known kinds a lifetime stamp, stamps person-ended rows
  inside the snooze window, and plans nothing on its own output.

Nothing calls the leaf yet; the migration (C2) and the seam (C4) do.
Tests: tests/unit/test_3246_platform_alerts_leaf.py (78), including a
bare-interpreter load by path. Mutation-checked: survivor min instead of
max, greedy sid regex, no snooze window, and reversed prefix order each go
red.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* feat(operator-queue): subject columns, backlog sweep and one-pending-per-subject index (#3246)

C2 of #3246, both schema tracks in one migration, ordered columns → sweep →
index: the partial unique index can only be created after the sweep has
collapsed the duplicates an installed backlog holds.

- `operator_queue.subject TEXT` + `last_seen_at TEXT` (nullable, no backfill
  beyond the sweep) in schema.py, tables.py and both migration tracks.
- `run_platform_alert_sweep(run)` in db/migrations.py — one function both
  tracks call over their own connection (sqlite3 cursor / SQLAlchemy
  `text()`), so the survivor rule cannot drift. It hands the fetched rows to
  the leaf's pure `plan_sweep` (function-local import; neither track pulls
  the service graph into `init_database()`), stamps the newest pending row
  per derived subject, ends the rest as ONE batch in the ent#611 vocabulary
  (`cancelled` / `platform` / `superseded` / NULL email / `batch_id`) with a
  compare-and-set on `status='pending'`, stamps a lifetime only on known
  kinds whose subject cannot be derived (never merged on a guess), and
  stamps `subject` on person-ended rows inside the 7-day snooze window.
  Agent-raised rows, `gate-` rows and external prefixes never derive.
- `uq_operator_queue_pending_subject` (partial: pending + subject) and
  `idx_operator_queue_agent_subject`, created after the sweep.
- Alembic `0090_platform_alert_subjects` chained after the live head
  `0089_supersede_queue_flood_backlog`.

Test (red first at collection — the migration did not exist):
tests/unit/test_3246_platform_alert_sweep.py drives the registered entry
against the pre-upgrade `schema.py` DDL holding duplicates: survivor and
stamps, one batch, untouched rows, snooze stamp, a second run changes
nothing, the index exists only after the run and bites on a second pending
row, DDL parity with schema.py, both tracks registered.

Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>

* feat(operator-queue): locked platform-alert accessors and the platform ending (#3246)

C3 of #3246 — the DB seam the platform-alert service (C4) will stand on.

db/operator_queue.py:
- `create_platform_item(agent, item, *, subject, max_pending_for_type)`:
  find → touch → count → insert in ONE `_lock_agent_for_create` transaction.
  A reading of a subject with a pending row updates it in place by a
  compare-and-set on `status='pending'` (title / question / priority /
  context with `seen_count`+1 / `last_seen_at` / `expires_at`); a lost CAS
  falls through to a fresh row, so a row a person ended is never
  overwritten. The find runs BEFORE the #1677 per-type count, so an update
  is never refused at budget. An `IntegrityError` from the partial unique
  index (a lock that failed open) re-finds and touches the winner. Returns
  `{"outcome": created|updated|refused_at_budget, "row", "changed"}`;
  `changed` is false on a bare repeat reading so nothing broadcasts.
- `find_pending_by_subject`, `find_person_ended_by_subject` (the seam's
  snooze read, newest person ending at or after `since`).
- `end_items_by_platform(ids, *, reason, batch_id)` — the `bulk_cancel_items`
  shape with `disposed_by='platform'`, NULL email, re-selected by batch id
  so only CAS-won rows come back.
- `mark_expired`'s per-id CAS gains `expires_at < now`: a row refreshed
  between the candidate select and the CAS keeps its new deadline.
- `_insert_values` takes keyword-only `subject` / `last_seen_at`;
  `_row_to_item` / `_SELECT_COLS` carry both.

services/ask_service.py: `clear_platform(ids, *, reason, batch_id=None)`
mirroring `expire()` — no Actor, `PLATFORM_ENDING_REASONS =
(condition_cleared, superseded)` enforced, one `platform_cleared` audit row,
one thin `operator_queue_cancelled` trigger per agent, observers get only
the rows this call won. database.py facade for the four accessors.
`test_ent329_operator_resume.py` G2 list gains the new CAS accessor.

#3130 / #3220: `_own_pending_conds`, the flood guard and
`create_bounded_alert_outcome` are untouched; their suites stay green.

Test (red first — the accessors did not exist):
tests/unit/test_3246_platform_alerts_db.py on the unit island's real
SQLite: two readings → one row, bare repeat → unchanged, person-ended row
never overwritten, budget refuses only with nothing to update, the index
refuses a second pending row, `mark_expired` keeps a refreshed row and still
expires an overdue one, the platform ending skips a person-ended row and
hands observers only CAS-won rows.

Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>

* test(operator-queue): register the #3246 C2/C3 unit files (#3246)

Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>

* feat(operator-queue): platform alert seam, reserved prefixes and the emitter ratchet (#3246)

C4. `platform_alerts.observe / clear / reconcile` on top of C3's locked
accessors: one pending row per (agent, subject), updated in place; the
kind's lifetime as `expires_at`; the T5 rule (after a person ended a
subject's row, nothing is filed for 7 days unless the priority rose or a
material key changed); never raises. Imports stay function-local, so the
module is still a stdlib-only leaf at import time.

`skills-reconcile-`, `skills-fleet-reinject-`, `retention-guard-` and
`ent615-git-token-scrub-` become reserved prefixes.

Guards (test_3246_platform_alerts_registry.py): two-way prefix parity, the
EMITTERS_NOT_YET_ON_SEAM ratchet (every platform emitter not yet on the
seam, `create_bounded_alert_outcome` included, each naming its follow-up),
the clear-site check, and the caller guard on the #3246 accessors.

Also places C3's `subject` / `last_seen_at` on the machine side of the
ent#715 row allowlist (not person data); test_ent715 re-pinned — it was
red since C3.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* feat(operator-queue): agent circuit breaker reports through the platform alert seam (#3246)

The dormant transition reports through `platform_alerts.observe` (kind
`circuit_dormant`, keyed by agent, 30-day net) and the two places the
code already knows the circuit closed — `record_success` recovering from
dormant, and the admin `reset_circuit` — end the row through
`platform_alerts.clear`. Leaves the #1677 allowlist and the ratchet.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* feat(operator-queue): system agent stale base image reports through the platform alert seam (#3246)

Both #1816 alarms report through `platform_alerts.observe`, keyed by the
system agent: `base_image_stale` (high) and `system_agent_start_failed`
(critical), 30-day net. A newer reading updates the one pending row, so
the N-workers-N-rows boot and the per-bucket start-failure rows collapse
to one row each. Cleared where the code already knows: a running boot
that finds the image current, and a start that adopted the rebuilt image
(`image_drift`), end `base_image_stale`; a successful start (delegated or
the pre-flight plain start) ends `system_agent_start_failed`.

The per-process staleness cooldown stays as emission spacing.
`START_FAILED_ALERT_BUCKET_SECONDS` no longer shapes the id (only its own
constant test reads it). Five test_1816 tests re-pinned from the direct
DB write to the seam call; the cross-process dedup test now proves one
pending row on the real DB.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* feat(operator-queue): subscription headroom reports through the platform alert seam (#3246)

Both ent#434 alerts report through `platform_alerts.observe` on the
`_sub-headroom` host: a subscription keys on the same cleaned id the legacy
`sub-headroom-{sid}-…` ids carried (`subject_key`), so a row the upgrade
sweep re-subjected matches a new reading; the fleet-wide alert keys on
`fleet`. A later reading updates the one pending row in place and a critical
reading replaces the warning (`tier` is the kind's material key), which
retires the documented "a 75% row still reads 75% at 92%" residual. The
reset day moves from the id to the row's context (`window`).

The evaluation pass had no place that named a recovery, so it now ends with
a reconcile (`clear_recovered`): only a subscription MEASURED back under its
threshold (`HAS_HEADROOM`) loses its row — an unassessable member keeps it —
and the fleet row survives until some member is measured with room.

Off the #1677 allowlist and the ratchet. ent#434's id-identity tests are
re-pinned to the subject; test_433_headroom_history asserted nothing about
the id shape and needed no change.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* feat(operator-queue): legacy skills-library adoption reports through the platform alert seam (#3246)

`_record_adoption_failure` reports through `platform_alerts.observe` on the
`_skills-sync` host with ONE subject per URL (`sha256(raw url)[:12]`), shared
by the steady-state refusal and both failure branches. A repeat — any branch —
updates the one pending row (latest message and priority, seen count) rather
than filing another, so one sync never files a second row (#2744's
guarantee, now stated on the subject). Severity per branch is unchanged
(steady state low/info, failures high/error); the URL echo stays scrubbed.

Cleared where the code knows: adoption success and a URL that already names
a source end the URL's row (`_clear_adoption_alert`); every adoption pass
reconciles against the current setting (`_reconcile_adoption_alerts`), so a
removed or changed `skills_library_url` ends the rows it no longer backs.

Off the #1677 allowlist and the ratchet, which now holds only PR-2 entries.
test_2744 re-pinned from request_id to subject (test 4 now asserts the
failure branches keep `high` on the URL's one subject); three ent#346 tests
re-pinned from the direct DB write to the seam call.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* feat(operator-queue): platform-ended alerts and the seen count on the queue surfaces (#3246)

A row the platform ended (disposed_by='platform', reason condition_cleared |
superseded) now reads "Ended by the platform — <why>" on ResolvedCard,
QueueItemDetail, /m and the Workspace ask views (one rule:
utils/operatorQueue.js::queueEnding/queueEndingText) — never a person's answer,
never a timeout, never the raw reason token as an operator note. An expired
alert reads "nobody acted on it". client_portal/asks/service.py::_ending_of
returns "platform" for such a row instead of falling through to "operator".

A pending alert seen more than once shows "seen N times · last seen <when>"
(queueSeenLine) on QueueCard, QueueItemDetail and /m; the Workspace asks panel
never renders platform alerts, so it gets no line.

Canary _PLATFORM_ALARM_SENTINELS gains _skills-sync (L-03 would otherwise read
the seam's rows as orphans). Stale "person | timeout" strings corrected in
dependencies.py, mcp-server types.ts and the get_my_ask description.

Tests: platformAlertSurfaces.spec.js (mounted; 12/15 red with the util change
reverted), test_3246_platform_alert_surfaces.py (4/7 red with the backend
change reverted).

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* docs(operator-queue): platform alerts are conditions — one row per subject (#3246)

Requirements §26.14 (OPS-001-PLATFORM-ALERTS), the operating-room flow
(status lifecycle + a Platform alerts section), the platform_alerts.py
catalog line, the subject/last_seen_at columns and the `platform` ending in
the database doc, and a learnings fragment. States plainly that only four
emitter families are on the seam in this PR (headroom, skills adoption,
system agent, circuit breaker); the rest follow in PR 2.

Corrects claims this branch made false: the headroom alert's id as its
state machine (security §20.x, backend catalog), #2744's one-row-per-URL
that a dismissal holds forever (skills), the base-image alarm filing one
item per worker that stays until acknowledged (internal-system-agent), and
disposed_by as an enum of two.

OPERATOR_PLATFORM_ALERT_LIFETIME_DAYS (14) and
OPERATOR_PLATFORM_ALERT_SNOOZE_DAYS (7) in .env.example and the dev, prod
and hosted compose files (hosted is the prod twin, #2280 parity).
tests/registry.json registers test_3246_platform_alert_surfaces.py.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* fix(operator-queue): the upgrade sweep reads raised_by, never an id shape alone (#3246)

The sweep derived a subject from the request id and never read raised_by,
so an agent's own ask under a prefix that was unreserved before this
branch (hosted on the agent's own name) grouped with the platform's
alarm and, if newer, survived while the platform row was ended as
superseded. The SELECT now takes only platform-raised rows, every write
carries the same predicate, and plan_sweep skips any row with raised_by
set even when handed one. The survivor stamp no longer binds a NULL into
COALESCE on the SQLAlchemy track: expires_at is in the statement only
when the planner set one.

Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>

* fix(operator-queue): the platform-alert sync broadcast names its host agent (#3246)

platform_alerts._broadcast_sync carried no agent key, so the trigger
reached every logged-in client (ent#467). It is now keyed by the row's
host agent the way the create path's operator_queue_new is, so the scope
filter delivers it only to clients who may see that agent's queue. The
poller's fleet-level operator_queue_sync stays allowlisted: it is one
trigger per cycle that spans agents; this one is always about one row.

Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>

* fix(operator-queue): pin the snooze window at the headroom emitter (#3246)

Mutation check: a zero-day snooze window left every emitter test green.
A warning a person just ended must not be re-filed by the next identical
reading, while an escalation to critical still reaches a person.

Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>

* fix(operator-queue): the #3246 refresh-vs-CAS test patched a module name, not the dict mark_expired reads (#3246)

`test_a_refresh_between_select_and_cas_keeps_the_row` monkeypatched
`db.operator_queue.select` by module name. Under the full suite a sibling
file evicts or stubs `sys.modules["db.operator_queue"]`, so the name resolves
to a re-imported or stand-in module while the `database` singleton's class
still reads the original module dict — the patch never fires, the refresh
never lands, and `assert state["refreshed"]` fails as `assert False` (CI
seed 12345, one failure in 21,569). Alone, the file is green on every seed.

Same claim, proved deterministically: patch
`type(real_db._operator_queue_ops).mark_expired.__globals__["select"]`, the
dict the running method looks names up in — the suite's established shape
(test_1632 `_patch_engine`, test_ent611 race tests). `mark_expired` itself
is unchanged: its per-id CAS already re-checks `expires_at < now`.

Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>

* fix(operator-queue): the platform ending reaches the loop from any thread, not only anyio's (#3246 merge-train)

`spawn_on_loop` handled a running loop or an anyio worker thread and re-raised
from anything else — "not a shape any production caller has". #3246 made it one:
the headroom sweep (`subscription_recovery_service`) and the skills reconcile
(`skills_sync_service`, `routers/skills.py`) end platform alerts through
`asyncio.to_thread`, the loop's DEFAULT executor, which anyio does not own. The
anyio portal raised, `platform_alerts._spawn` / `ask_service._ended` swallowed
it, and every such ending committed with no `platform_cleared` audit row and no
`operator_queue_cancelled` trigger, behind a WARNING traceback. Reproduced: loop
thread OK, `anyio.to_thread` OK, `asyncio.to_thread` → RuntimeError.

Fixed in the helper rather than at the call sites: a captured host loop with a
`call_soon_threadsafe` fallback. `main.py::lifespan` records the loop before any
boot phase, and every on-loop spawn refreshes it, so the next thread-origin
caller — a `threading.Thread` a service starts itself included — inherits the
fix instead of each site having to remember `anyio.to_thread.run_sync`. The
task is still created ON the loop thread (`_schedule_on_loop`'s contract) and
the caller never waits for the work. A closed or non-running captured loop is
not a target (the private-loop footgun below), and with nothing to hop to the
helper still raises loudly — never the silent no-op ent#430 removed.

Pinned by `test_3246_platform_alerts_thread_origin.py`: `clear` / `observe`
driven through `asyncio.to_thread` land the audit row and the trigger with no
"could not schedule" warning; the spawn from the default executor and from a
plain thread; the lifespan capture is first in the boot sequence; the loud
failure with no loop; a closed captured loop is ignored.

Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>

* test(1816): a private loop cancels and flushes what the run spawned before closing (#3246 merge-train)

`test_1816_system_agent_adoption` ran `ensure_deployed` on a `new_event_loop()`
and closed it with the #3246 follow-ups (audit, broadcast) still registered in
`operator_resume_service._inflight` — pending tasks bound to a dead loop, or
finished ones whose `_inflight.discard` callback was queued when `stop()`
landed and never ran. The next test to gather `_inflight` on ITS loop failed
deterministically with "The future belongs to a different loop"
(`test_ent329_operator_resume::test_spawn_keeps_a_strong_reference`); CI
shuffles, so it recurred.

`_run` now cancels the leftover tasks (cancelled, not awaited: a follow-up may
wait on a transport this island never provides), gathers them, and runs one
more tick so the done callbacks drain, before closing. Verified in both file
orders.

Co-Authored-By: Claude Fable 5.1 <noreply@anthropic.com>

* test(operator-queue): an open but stopped host loop is not a spawn target (#3246)

Merge-train validation found the `not loop.is_running()` rung of
`_live_host_loop` unpinned: deleting it left all 104 tests green. Such a
loop accepts `call_soon_threadsafe` and parks the task forever. The new
case captures one, expects the loud RuntimeError, and asserts nothing
was queued on it. Deleting the rung now turns it red.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

* merge-train: restore #3276's registry descriptions reverted by the #3275 dev merge

The merge-train's registry rebuild for #3275 took the member branch's
list plus dev's new entries, so dev-side EDITS to existing entries were
lost: #3276's trinity-enterprise#792 text on test_files_guardrail_bypass.py
and test_ent596_skill_manager.py was reverted when #3275 landed
(58c7b80). Recomputed with a per-entry three-way merge from dev before
that landing: both descriptions are restored and #3276/#3273's entries
return to their positions. Metadata only; no test behaviour changes.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>

---------

Co-authored-by: Trinity Agent (trinity) <trinity-agent@ability.ai>
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
Co-authored-by: trinity-ability <309458136+trinity-ability@users.noreply.github.com>
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