Skip to content
@CCPBioSim

CCPBioSim

This is the development repository of the Collaborative Computational Project for Biomolecular Simulation

Popular repositories Loading

  1. qmmm-workshop qmmm-workshop Public

    A repository containing the build steps for the ccpbiosim workshop on QM/MM

    Jupyter Notebook 70 21

  2. fesetup fesetup Public archive

    A tool for setting up free energy simulations.

    Python 37 18

  3. CCP5_Simulation_of_BioMolecules CCP5_Simulation_of_BioMolecules Public

    Jupyter Notebook 23 10

  4. mdanalysis-ml-workshop mdanalysis-ml-workshop Public

    Jupyter Notebook 17 5

  5. prepmd prepmd Public

    Automatically prepare structures from the PDB for molecular dynamics simulation

    Python 14 2

  6. biosim-analysis-workshop biosim-analysis-workshop Public

    Workshop on the preparation, execution, and analysis of protein molecular dynamics simulations

    Jupyter Notebook 12 4

Repositories

Showing 10 of 77 repositories
  • pca-workshop Public

    A repository containing the build steps for the ccpbiosim workshop on PCA

    CCPBioSim/pca-workshop's past year of commit activity
    Jupyter Notebook 7 MIT 1 1 1 Updated Oct 3, 2026
  • basic-analysis-workshop Public

    A repository containing the build steps for the ccpbiosim workshop on basic analysis

    CCPBioSim/basic-analysis-workshop's past year of commit activity
    Jupyter Notebook 5 MIT 0 1 1 Updated Oct 3, 2026
  • structure-validation-workshop Public Forked from jimboid/biosim-structure-validation-workshop

    A repository containing the build steps for the ccpbiosim workshop on Structure Validation

    CCPBioSim/structure-validation-workshop's past year of commit activity
    Jupyter Notebook 1 MIT 1 1 1 Updated Oct 3, 2026
  • dna-workshop Public
    CCPBioSim/dna-workshop's past year of commit activity
    Jupyter Notebook 1 MIT 0 2 2 Updated Oct 3, 2026
  • clustering-workshop Public

    A repository containing the build steps for the ccpbiosim workshop on Clustering.

    CCPBioSim/clustering-workshop's past year of commit activity
    Jupyter Notebook 11 MIT 1 1 1 Updated Oct 3, 2026
  • ubiquitin-analysis-workshop Public

    A repository containing the build steps for the ccpbiosim workshop on Ubiquitin analysis

    CCPBioSim/ubiquitin-analysis-workshop's past year of commit activity
    Jupyter Notebook 2 MIT 0 1 1 Updated Oct 3, 2026
  • basic-statistics-workshop Public

    A repository containing the build steps for the ccpbiosim workshop on basic statistics

    CCPBioSim/basic-statistics-workshop's past year of commit activity
    Jupyter Notebook 4 MIT 1 1 1 Updated Oct 3, 2026
  • equilibration-workshop Public

    A repository containing the build steps for the ccpbiosim workshop on Equilibration

    CCPBioSim/equilibration-workshop's past year of commit activity
    Jupyter Notebook 3 MIT 0 1 1 Updated Oct 3, 2026
  • pdb2pqr-workshop Public

    A repository containing the build steps for the ccpbiosim workshop on PDB2PQR Resources

    CCPBioSim/pdb2pqr-workshop's past year of commit activity
    Jupyter Notebook 2 MIT 0 1 1 Updated Oct 3, 2026
  • coarse-graining-workshop Public Forked from KhalidLab/CCPBioSimPractical

    Introduction to Coarse Graining with YidC: CCPBioSim Training Week 2025

    CCPBioSim/coarse-graining-workshop's past year of commit activity
    Jupyter Notebook 1 GPL-3.0 1 4 1 Updated Oct 3, 2026
View all repositories

Top languages

Loading…

Most used topics

Loading…