Fixing PCA inconsistencies in plotting.#20
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In the original implementation, the select_best_sil and clustering_emd would calculate a standard PCA on the EMD matrix if the number of columns was >50. This is standard scanpy behavior. Now, the PCA is either not calculated, specifically calculated or calculated conditionally as before.
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In the original implementation, the select_best_sil and clustering_emd would calculate a standard PCA on the EMD matrix if the number of columns was >50. This is standard scanpy behavior. Now, the PCA is either not calculated, specifically calculated or calculated conditionally as before.