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DiamondLightSource
python-murfey
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Register CLEM colours
- #739
#739
Merged
tieneupin
merged 20 commits into
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DiamondLightSource/python-murfey:main
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register-clem-colours
DiamondLightSource/python-murfey:register-clem-colours
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Feb 11, 2026
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Register CLEM colours
#739
tieneupin
merged 20 commits into
main
DiamondLightSource/python-murfey:main
from
register-clem-colours
DiamondLightSource/python-murfey:register-clem-colours
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Commits
Commits on Feb 10, 2026
Added logic to optionally insert collection mode and colour flags for the Atlas and GridSquare tables in ISPyB for the CLEM workflow
tieneupin
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f02b0ec
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Fixed 'register_atlas_update' test
tieneupin
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07f9d40
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Test call contents of 'register_data_collection_group'
tieneupin
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762d033
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Fixed 'register_preprocessing_results' tests
tieneupin
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0c1461d
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Assign color flags to attributes directly instead of using 'setattr'
tieneupin
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b5ab82c
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Store color flags and collection mode in variables instead of repeating the 'get' call
tieneupin
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7147381
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Assign color flags to attributes directly instead of using 'setattr'
tieneupin
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fffcee3
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Database table classes get instantiated with different IDs, and do not match
tieneupin
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4492e4f
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Forgot to pass 'color_flags' parameter to 'insert_grid_square' function
tieneupin
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b5c905b
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Iteratively update color flaggs using 'setattr'
tieneupin
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94f73d0
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Reverted import
tieneupin
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b315684
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Missed inserting a 'color_flag' field in an if-else block branch
tieneupin
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e6b340a
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remove empty dict and list defaults
d-j-hatton
authored and
tieneupin
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473937d
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Added unit test for '_get_color_flags'
tieneupin
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15185ca
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Changed '_get_color_flags' to overwrite all the colour flags instead of just activating the ones it receives; fixed colour flag and collection mode insertion logic for the Atlas
tieneupin
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1c36fc2
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Add columns to CLEMImageSeries table to keep track of colours present in the dataset
tieneupin
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04310ed
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Added column to CLEMImageSeries table to keep track of collection mode used for dataset
tieneupin
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b1ba654
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Register colours and collection mode in CLEMImageSeries table upon arrival of message, then translate it across to Atlas and GridSquare tables in ISPyB
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119b489
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Unpacked dictionary incorrectly
tieneupin
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365afd7
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Fixed error with calculating the location of ROIs on the atlas image
tieneupin
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d7320d4
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