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Register FIB data - #766

Merged

tieneupin merged 27 commits into

mainfrom

Apr 8, 2026

Merged

Register FIB data#766
tieneupin merged 27 commits into
mainfrom
register-fib-data

Commits on Mar 25, 2026
- Added placeholder function to register FIB atlas with
  tieneupin
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  097907b
- Added FIB atlas registration workflow as an entry point
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  d60f917
- Added new router for the FIB workflow, with a POST function to register FIB atlas images
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  19ff022
- Updated FIBContext behaviour:
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  0ac6891
- Shortened class function name
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  97d1091
- Updated existing tests
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  36ddac5
- Added unit tests for the new API endpoint
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  b84ecd7
Commits on Mar 26, 2026
- Add additional columns to the 'ImagingSite' table to keep track of stage position, image field of view, and rotation
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  d7ab0ee
Commits on Mar 27, 2026
- Moved 'number_from_name' into a FIB utility module
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  04cfb18
- Import 'number_from_name' from new module instead
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  ef07770
- Fixed bug in backend call to make GIFs
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  ee0c140
- Reduced level of the log warning about file extension not being found
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  bb94066
- Revert "Import 'number_from_name' from new module instead"
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  921be1b
- Revert "Moved 'number_from_name' into a FIB utility module"
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  287034e
- Updated FIB atlas image registration workflow:
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  b9da8a3
- Use NumPy to convert images to 8-bit before creating GIFs
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  a8230ee
- Pass destination file paths to the GIF creating API endpoint
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  c190238
- Added unit test for the FIBContext for the AutoTEM post transfer workflow
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  2f63156
- More thorough test of 'post_transfer' behaviour for Maps workflow
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  79e55b4
Commits on Mar 30, 2026
- Merged recent changes from 'main' branch
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  f24b6a3
- Fixed broken test after merging changes from 'main'
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  ddf274d
- Update FIB atlas image registration logic
  tieneupin
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  e284292
- Added test module for the 'register_atlas' FIB workflow
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  3ca97cd
- Added test for the '_parse_metadata' function
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  99215b2
- Added test for the GIF making endpoint function
  tieneupin
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  0aefb00
- Merged recent changes from 'main' branch
  tieneupin
  committed
  0d96dfe
Commits on Mar 31, 2026
- Added logic to try searching for XML metadata in other tag keys found in FIB atlas file if it's not found under the default key
  tieneupin
  committed
  1a64a85

Commits

Commits on Mar 25, 2026

Commits on Mar 26, 2026

Commits on Mar 27, 2026

Commits on Mar 30, 2026

Commits on Mar 31, 2026