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DiamondLightSource
python-murfey
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Register FIB data in ISPyB
- #805
#805
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tieneupin
merged 18 commits into
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DiamondLightSource/python-murfey:main
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DiamondLightSource/python-murfey:register-fib-ispyb-data
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May 29, 2026
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Register FIB data in ISPyB
#805
tieneupin
merged 18 commits into
main
DiamondLightSource/python-murfey:main
from
register-fib-ispyb-data
DiamondLightSource/python-murfey:register-fib-ispyb-data
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Commits on May 20, 2026
More noticeable dividers between different database table categories
tieneupin
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3709464
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Moved 'number_from_name' into new module 'murfey.util.fib'
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Adjust logic to register only the latest FIB atlas acquired for a FIB sample slot
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Updated DB test to check that only one file was registered
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Commits on May 21, 2026
Migrated 'number_from_name' test to its own test module
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Updated registratino logic so that 'add' and 'commit' always happen at the end of the function, and both new and old entries are populated or updated correctly
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Fixed broken test
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409f9a4
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Added logic to register data collection group and atlas rows in ISPyB using FIB atlas data
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Added tests for the ISPyB database registration components of the workflow
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Commits on May 22, 2026
Module import can occur in the test function instead, since it's only needed for one function
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Commits on May 28, 2026
Merged recent changes from 'main' branch
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Updated the FIB atlas registration workflow so that it is passed to and run through the RabbitMQ feedback queue instead of being loaded directly
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Updated Pydantic model name and removed DB dependency for 'register_fib_atlas' API endpoint
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Updated test for 'register_fib_atlas' API endpoint
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Updated test for 'register_atlas' FIB workflow
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Commits on May 29, 2026
Add minimal logic needed to create, save, and register thumbnail images of the FIB atlases
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Added minimal changes needed to test the '_make_thumbnail' function
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Do not manually chmod 'processed' directory; just inherit permissions as normal
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