Add birth, arrival and conception lookups and relax entry validation

nbri_ehr/resources/data/birth_condition.tsv

@@ -0,0 +1,3 @@
+value	title	sort_order
+L	Live	1
+D	Dead	2

nbri_ehr/resources/data/breeding_type.tsv

@@ -0,0 +1,9 @@
+value	title	sort_order
+0	Not assigned	1
+A	Assigned breeding protocol	2
+C	Cull	3
+H	Held from mating activity	4
+M	Multi-male	5
+Q	Testing as breeder	6
+S	Single male harem	7
+T	Time-mated	8

nbri_ehr/resources/data/delivery_mode.tsv

@@ -0,0 +1,4 @@
+value	title
+V	Vaginal
+N	Surgical-clinical
+NX	Surgical experimental

nbri_ehr/resources/data/editable_lookups.tsv

@@ -18,6 +18,7 @@ ehr_lookups	bcs_score	Clinical	Body Condition Score	Clinical observation fixed v
 ehr_lookups	behavior_abnormality	Clinical	Behavior Abnormality	Clinical observation fixed values.
 ehr_lookups	behavior_mgmt_codes	Behavior	Behavior Management Codes	Behavior observation fixed values.
 ehr_lookups	behavior_types	Behavior	Behavior Types	Behavior observation fixed values.
+ehr_lookups	birth_condition	Colony Management	Birth Condition	Birth condition values.
 ehr_lookups	blood_draw_reason	Clinical	Blood Draw Reason	Used in blood draw datasets.
 ehr_lookups	blood_draw_tube_type	Clinical	Blood Draw Tube Type	Used in blood draw datasets.
 ehr_lookups	blood_sample_type	Clinical	Blood Sample Types	Used in blood draw datasets.
@@ -37,6 +38,7 @@ ehr_lookups	country_category	Colony Management	Country Category
 ehr_lookups	daily_enrich_codes	Behavior	Daily enrichment codes.	
 ehr_lookups	data_category	Clinical	Data Categories	Used in datasets.
 ehr_lookups	death_reason	Colony Management	Death Reason	
+ehr_lookups	delivery_mode	Colony Management	Delivery Mode
 ehr_lookups	delivery_state	Colony Management	Delivery State	
 ehr_lookups	dental_obs	Clinical	Dental Observation Types	Clinical observation values.
 ehr_lookups	derm_obs	Clinical	Dermatologic Observation Types	Clinical observation values.
@@ -61,6 +63,7 @@ ehr_lookups	general_obs	Clinical	General Observation Types	Clinical observation
 ehr_lookups	genital_types	Colony Management	Genital Types	Clinical observation fixed values.
 ehr_lookups	genitourinary_obs	Clinical	Genitourinary Observation Types	Clinical observation fixed values.
 ehr_lookups	geographic_origins	Colony Management	Geographic Origins	Used in demographics dataset.
+ehr_lookups	breeding_type	Colony Management	Breeding Type	Breeding group assignment codes.
 ehr_lookups	hernia_types	Clinical	Hernia Types	Clinical observation fixed values.
 ehr_lookups	housing_reason	Housing	Housing Move Reason	Used in housing dataset for location transfers.
 ehr_lookups	hyd_score	Clinical	Hydration Score	Clinical observation fixed values.

nbri_ehr/resources/data/lookup_sets.tsv

@@ -16,6 +16,7 @@ bcs_score	BCS Store	value	title
 behavior_abnormality	Behavior Abnormality	value
 behavior_mgmt_codes	Behavior Management Codes	value
 behavior_types	Behavior Types	value
+birth_condition	Birth Condition	value	title
 blood_draw_reason	Blood Draw Reason	value
 blood_sample_type	Blood Sample Types	value
 cage_type	Cage Type	value	title
@@ -31,6 +32,7 @@ country_category	Country Category	value	title
 daily_enrich_codes	Daily Enrichment Codes	value
 data_category	Data Category Field Values	value
 death_reason	Death Reason	value
+delivery_mode	Delivery Mode	value	title
 delivery_state	Delivery State	value	title
 dental_obs	Dental Observations	value
 derm_obs	Dermatologic Observations	value
@@ -48,6 +50,7 @@ gastro_types	Gastrointestinal Types	value
 general_obs	General Observations	value
 genital_types	Genital Types	value
 genitourinary_obs	Genitourinary Observations	value
+breeding_type	Breeding Type	value	title
 hernia_types	Hernia Types	value
 housing_reason	Housing Reason	value
 hyd_score	Hyd Score	value

nbri_ehr/resources/data/lookupsManifest.tsv

@@ -18,6 +18,7 @@ bcs_score
 behavior_abnormality
 behavior_mgmt_codes
 behavior_types
+birth_condition
 blood_draw_reason
 blood_draw_tube_type
 blood_sample_type
@@ -35,6 +36,7 @@ country_category
 daily_enrich_codes
 data_category
 death_reason
+delivery_mode
 delivery_state
 dental_obs
 derm_obs
@@ -57,6 +59,7 @@ general_obs
 genital_types
 genitourinary_obs
 geographic_origins
+breeding_type
 hernia_types
 housing_reason
 hyd_score

nbri_ehr/resources/data/lookupsManifestTest.tsv

@@ -17,6 +17,7 @@ bcs_score
 behavior_abnormality
 behavior_mgmt_codes
 behavior_types
+birth_condition
 blood_draw_reason
 blood_draw_tube_type
 blood_sample_type
@@ -34,6 +35,7 @@ country_category
 daily_enrich_codes
 data_category
 death_reason
+delivery_mode
 delivery_state
 dental_obs
 derm_obs
@@ -56,6 +58,7 @@ general_obs
 genital_types
 genitourinary_obs
 geographic_origins
+breeding_type
 hernia_types
 housing_reason
 hyd_score

nbri_ehr/resources/data/pregnancy_result.tsv

@@ -1,3 +1,7 @@
 value	title
-1	Stillborn
-2	Abort
+NT	No Tissue
+FD	Fetal Death
+FN	Found at necropsy
+FX	Live, Term, euthanized at birth
+ND	Live, Died day of birth (lungs inflated)
+FL	Fetal Delivery, live in Utero

nbri_ehr/resources/data/source.tsv

@@ -1,108 +1,103 @@
 code	meaning
-1	Adv Bioscience Labs
-2	Alamogordo PrimateFaclty
-3	Alpha Genesis, Inc.
-4	Barton West End Farm
-5	Battelle Memorial Inst
-6	Baylor Research Inst
-7	BIOCULTURE (MTIUS) LTD
-8	Bioculture US LLC
-9	BIOQUAL, Inc.
-10	Boehringer Ingelheim
-11	Boston University
-12	Buckshire Corporation
-13	Caribbean Primate Rsrch
-14	CBNC
-15	CDC
-16	Charles River Laboratory
-17	Charles River/Reno
-18	Chimp Haven
-19	China/Guangxi GF Sci Pri
-20	Chiron Corp
-21	CiToxLab North America
-22	Covance Research Prod
-23	CR Rsrch Models Houston
-24	Ctr Captive Chimp Care
-25	Cynologics Ltd
-26	DHMRI
-27	Duke Univ Medical Ctr
-28	Durham Research Center
-29	Emory University YPRC
-30	Envigo Global Services
-31	Guangdong Landau Biotech
-32	Hainan, China
-33	Harvard Medical School
-34	Indonesia (Pt. W. Sat)
-35	Johns Hopkins University
-36	LC Preclinical Research
-37	Lovelace Biomedical
-38	LRRI
-39	LSU Health Science BR
-40	LSU Health Science NO
-41	LSU Health Science Shv
-42	Mannheimer Foundation
-43	Mass. General Hospital
-44	MD Anderson Cancer Ctr.
-45	Merck & Co (Rahway)
-46	Merck & Co (WP)
-47	Merck Research Labs WP
-48	Nationwide Children's
-49	New England NPRC
-50	New York University
-51	NIAID (Bioqual)
-52	NIAID Morgan Island
-53	NIAID NIH Animal Ctr
-54	NICHD/NIH
-55	NIH
-56	NIH Animal Center
-57	NINDS NIH Animal Ctr
-58	Novartis Pharm. Corp.
-59	Novartis Vaccines Srl
-60	NYU School of Medicine
-61	Oregon NPRC
-62	Pfizer
-63	Pfizer-Andover
-64	Pfizer-Pearl River
-65	PreLabs
-66	Primate Products
-67	Primedica Labs
-68	PrimGen
-69	Primgen CSP
-70	RainForest Adventures
-71	Republic of Mauritius
-72	Rocky Mountain Lab
-73	Save the Chimps
-74	Siconbrec Inc
-75	Sierra Biomedical
-76	SNBL-SRC
-77	SRI International
-78	St. Jude Childrens Rsrch
-79	St. Kitts
-80	Stanford Univ School Med
-81	Stony Brook University
-82	SUNY Downstate Medical
-83	SW Found Biomed Rsrch
-84	Texas Biomed
-85	Three Springs Scientific
-86	Tulane NPC (Covington)
-87	Tulane Univ Medical Ctr
-88	Univ Alabama Birmingham
-89	Univ of Illinois
-90	Univ of Kansas Med Ctr
-91	Univ of Maryland
-92	Univ of Nebraska Med Ctr
-93	Univ of Pittsburgh
-94	Univ of Texas at Austin
-95	Univ of Washington NPRC
-96	Univ of Wisconsin
-97	Univ Tex MD Anderson CC
-98	USAMRICD
-99	USAMRIID
-100	Virginia Commonwealth U
-101	WakeForest School of Med
-102	WaNPRC
-103	Worldwide Primates, Inc.
-104	WRAIR
-105	Wyeth-Ayerst Rsrch (PR)
-106	Yale Univ Sch Medicine
-107	Yerkes Regional PRC
+AAI	ASIATIC ANIMAL IMPORTS
+BIOQUAL	BIOQUAL, INCORPORATED
+BRANDEIS	BRANDEIS UNIVERSITY
+CA-DPH	CALIF DEPT PUBLIC HEALTH FACILITIES
+CA-DOH	CALIFORNIA STATE DEPARTMENT OF HEALTH
+CPRC	CARRIBEAN PRIMATE CENTER
+CWRU	CASE WESTERN RESERVE UNIVERSITY
+UCD-CNS	CENTER FOR NEUROSCIENCE, UCD
+CR-KL	CHARLES RIVER - KEY LOIS
+CRL	CHARLES RIVER LABS
+CRRP	CHARLES RIVER RESEARCH PRIMATES INC
+BROOKFIELD	CHICAGO ZOOLOGICAL PARK (BROOKFIELD ZOO)
+CHILDRENS	CHILDRENS HOSPITAL
+CHIMR	CHRIST HOSPITAL INST. FOR MEDICAL RES.
+CSU	COLORADO STATE UNIVERSITY
+CORNELL	CORNELL UNIVERSITY
+COULSTON	COULSTON FOUNDATION
+COVANCE	COVANCE RESEARCH PRODUCTS, INC.
+PRIMGEN	CSP-PRIMGEN
+CUTTER	CUTTER LAB
+DMT	DEL MUNDO TRADING
+EPZ	EL PASO ZOOLOGICAL GARDENS
+ENVIGO	ENVIGO
+HAHNEMANN	HAHNEMANN UNIVERSITY
+HL	HAZELTON LABORATORIES
+HLA	HAZELTON LABORATORIES AMERICA INC.
+UNK	INSTITUTION UNKNOWN
+ISU-VDL	IOWA STATE UNIV, VET DIAGNOSTIC LAB
+JVL	JAN VACEK LIMITED
+JHMC	JEWISH HOSPITAL & MEDICAL CENTER
+JRI	JOHNSON RESEARCH INSTITUTE
+KNLPC	KUNMING NATIONAL LABORATORY PRIMATE CTR.
+LABS	LABORATORY ANIMAL BREEDERS AND SERVICES
+LABSINDO	LABSINDO
+LEMSIP	LEMSIP, NEW YORK MEDICAL CENTER, RDI
+LAIR	LETTERMAN ARMY RES INST-PRESIDIO
+LB	LITTON BIONETICS
+LLU	LOMA LINDA UNIVERSITY
+MSU-MI	MICHIGAN STATE UNIVERSITY
+MSU-MT	MONTANA STATE UNIVERSITY
+MPI	MPI RESEARCH
+NASA-ARC	NASA-AMES RESEARCH CENTER
+NAMRL	NAVAL AEROSPACE MEDICAL RESEARCH LAB
+NEPRC	NEW ENGLAND PRIMATE RESEARCH CENTER
+NIHAC	NIH ANIMAL CENTER
+ORPRC	OREGON REGIONAL PRIMATE RESEARCH CENTER
+PARC-SAF	PARC SAFARI AFRICAN
+PPC	PERRINE PRIMATE CENTER
+PPP	PERUVIAN PRIMATOLOGICAL PROJECT
+PET-FARM	PET FARM
+PRIMLAB	PRIMATE LABORATORY
+PPI	PRIMATE PRODUCTS, INCORPORATED
+PRIVATE	PRIVATE PARTY
+RIEPT	RES. INST. OF EXP. PATHOLOGY & THERAPY
+SALK	SALK INSTITUTE
+SFGH	SAN FRANCISCO GENERAL HOSPITAL
+SNBL	SHIN NIPPON BIOMEDICAL LABORATORIES
+SICONBREC	SICONBREC
+SBM	SIERRA BIOMEDICAL
+SKB	SMITH, KLINE, BEECHAM
+SIU	SOUTHERN ILLINOIS UNIVERSITY
+SIU-SOM	SOUTHERN ILLINOIS UNIVERSITY MED SCHOOL
+SORI	SOUTHERN RESEARCH INSTITUTE
+SFRE	SOUTHWEST FOUNDATION FOR RES. & EDUC.
+SWRF	SOUTHWEST RESEARCH FOUNDATION
+SWRI	SOUTHWEST RESEARCH INSTITUTE
+SOPF	STANFORD OUTDOOR PRIMATE FACILITY
+SRI	STANFORD RESEARCH INSTITUTE
+SUNY-SB	STATE UNIV OF NEW YORK AT STONY BROOK
+SXZ	SUZHOU XISHAN ZHONGKE LAB ANIMAL CO.
+SYNTEX	SYNTEX (USA) INCORPORATED
+TARPON	TARPON ZOO
+TTUHSC	TEXAS TECH HEALTH SCIENCE CENTER
+BROOKS-AFB	TEXAS, BROOKS AIR FORCE BASE
+TPI	THE PARKINSON'S INSTITUTE
+TNPRC	TULANE (DELTA) REGIONAL PRIMATE RES CTR
+UCB	UC BERKELEY
+UCLA	UC LOS ANGELES
+UCR	UC RIVERSIDE
+UCSD	UC SAN DIEGO
+UCSF	UC SAN FRANCISCO VIVARIUM
+UC-ARS	UNIV OF CALIF, ANIMAL RESOURCES SERVICE
+GPC	UNIV OF GOTTINGEN PRIMATE CENTER
+UH-RAF	UNIV OF HAWAII, RESEARCH ANIMAL FACILITY
+OUHSC	UNIV OF OKLAHOMA HEALTH SCI. CENTER
+UTHSC-H	UNIV OF TEXAS, HEALTH SCI CTR, HOUSTON
+UCHSC	UNIVERSITY OF COLORADO HEALTH SCIENCES
+UCMC	UNIVERSITY OF COLORADO MEDICAL CENTER
+UIC	UNIVERSITY OF ILLINOIS AT CHICAGO
+UNV	UNIVERSITY OF NEVADA
+UNM	UNIVERSITY OF NEW MEXICO
+UPR	UNIVERSITY OF PUERTO RICO
+UTSCC	UNIVERSITY OF TEXAS SYSTEM CANCER CENTER
+UNK-CN	UNKNOWN INSTITUTION, CHINA
+VBS	VALLEY BIOSYSTEMS
+WFSM	WAKE FOREST SCHOOL OF MEDICINE
+WANPRC	WASHINGTON REGIONAL PRIMATE RESEARCH CTR
+WHMC	WILFORD HALL MEDICAL CENTER
+WRPRC	WISCONSIN REGIONAL PRIMATE RESEARCH CTR
+WAI	WOODWARD ASIATIC IMPORTS
+WWP	WORLD WIDE PRIMATES, INC.
+YPRC	YEMASSEE PRIMATE RESEARCH CENTER