Issues

• CI: install conda dependencies step fails

  bugCI
  Bug

  MDAnalysis/mdaencore#80 · Filter by author orbeckst opened on May 7, 2026
  1

• Deprecation Warning asel argument

  MDAnalysis/mdaencore#74 · Filter by author slieped opened on Nov 13, 2025
  1

• Encore.cluster very slow

  MDAnalysis/mdaencore#71 · Filter by author khoroshyy opened on Nov 15, 2024

• numpy version not defined on wheel building

  MDAnalysis/mdaencore#67 · Filter by author IAlibay opened on Apr 28, 2024

• [BUG] ClusterCollection object has no attribute metadata

  MDAnalysis/mdaencore#62 · Filter by author HeetVekariya opened on Jan 5, 2024
  2

• Getting "TypeError: Topology argument required to make Universe" when clustering a universe from sliced trajectory

  MDAnalysis/mdaencore#58 · Filter by author leffetripel opened on Nov 20, 2023
  2

• Provide consistent PRNG across encore

  enhancement
  MDAnalysis/mdaencore#40 · Filter by author IAlibay opened on Sep 6, 2023
  1

• Various documentation issues

  documentation
  MDAnalysis/mdaencore#39 · Filter by author IAlibay opened on Sep 6, 2023

• remember to unpin sphinxcontrib-bibtex

  CIdocumentation
  MDAnalysis/mdaencore#16 · Filter by author ianmkenney opened on Aug 25, 2023
  4

• BUG, BLD: test_clustering_three_ensembles_two_identical fails on M1 Mac

  tests
  MDAnalysis/mdaencore#28 · Filter by author tylerjereddy opened on Apr 3, 2022
  2

• Test coverage for ENCORE needs to be increased

  tests
  MDAnalysis/mdaencore#29 · Filter by author jbarnoud opened on Feb 17, 2022
  4

• MAINT: ap.c gcc optimization portability

  MDAnalysis/mdaencore#31 · Filter by author tylerjereddy opened on Oct 21, 2020
  2

• Clustering ensemble of in memory universes

  bug
  MDAnalysis/mdaencore#32 · Filter by author fluver opened on Mar 2, 2020

• DBSCAN does not make outliers clear

  MDAnalysis/mdaencore#33 · Filter by author lilyminium opened on Mar 1, 2020
  2

  

• unittest failure for three encore.hes test (test_hes_to_self, test_hes, test_hes_align)

  tests
  MDAnalysis/mdaencore#34 · Filter by author archxlith opened on Nov 12, 2019
  4

• five more tests fail when pytest is run with four parallel tasks on Fedora 29 (rawhide)

  tests
  MDAnalysis/mdaencore#35 · Filter by author rathann opened on Jul 4, 2018
  7

• two analysis/test_encore.py tests failing on Fedora 29 (rawhide)

  tests
  MDAnalysis/mdaencore#36 · Filter by author rathann opened on Jul 4, 2018
  1

• Encore uses weak random numbers

  enhancement
  MDAnalysis/mdaencore#37 · Filter by author kain88-de opened on Jul 5, 2017
  2

  

• FAIL: test_clustering_three_ensembles_two_identical on non-x86 64bit arches (aarch64, ppc64, ppc64le and s390x)

  tests
  MDAnalysis/mdaencore#38 · Filter by author rathann opened on Jun 8, 2017
  7