chore: nightly skills sync

[github-actions]

Automated skills sync

Components updated:

• KERMT
• Proteina-Complexa
• aggregate payload
• compliance backfill
• nvMolKit

Cards backfilled from compliance.d (upstream still owes a skill-card.md):

• open-models-skills/proteina-complexa/complexa-setup
• open-models-skills/proteina-complexa/complexa-sweep
• open-models-skills/proteina-complexa/complexa-design
• open-models-skills/proteina-complexa/complexa-target
• open-models-skills/proteina-complexa/complexa-evaluate-pdbs

Upstream now ships its own card — delete these compliance.d entries:

• compliance.d/open-models-skills/kermt/kermt-setup/skill-card.md
• compliance.d/open-models-skills/kermt/kermt-embed/skill-card.md
• compliance.d/open-models-skills/kermt/kermt-finetune/skill-card.md
• compliance.d/open-models-skills/kermt/kermt-infer/skill-card.md
• compliance.d/open-models-skills/kermt/kermt-pretrain-scratch/skill-card.md
• compliance.d/open-models-skills/kermt/kermt-monitor/skill-card.md
• compliance.d/open-models-skills/kermt/kermt-add-cmim-pretrain/skill-card.md
• compliance.d/open-models-skills/kermt/kermt-continue-pretrain/skill-card.md
• compliance.d/library-skills/nvmolkit-usage/skill-card.md

Sourced content changes + any pruning are shown in the diff. Native
skills (NIM, workflows, parabricks, genomics, cuEquivariance) are untouched.
Review the diff and merge — nothing merges unattended.

[greptile-apps]

Greptile Summary

This nightly synchronization updates nvMolKit skill metadata and adds a signing bundle.

• Replaces the library skill card with results for nvMolKit 0.6.0 and twelve evaluations.
• Adds an in-toto/Sigstore bundle, but its resource manifest does not match the synchronized package.
• The previously reported broken links in the Complexa sweep documentation remain present.

Confidence Score: 4/5

The PR is not safe to merge until the nvMolKit signing bundle is regenerated for the synchronized files.

The new bundle cannot verify the current package because its SKILL.md digest differs and an attested BENCHMARK.md is missing. The earlier Complexa sweep documentation finding also remains outstanding: its four relative documentation links still target nonexistent files.

Files Needing Attention: library-skills/nvmolkit-usage/skill.oms.sig

Important Files Changed

Filename	Overview
library-skills/nvmolkit-usage/skill.oms.sig	Adds a signature bundle whose attested resources do not match the current package.
library-skills/nvmolkit-usage/skill-card.md	Updates ownership, evaluation results, risk metadata, and the reported nvMolKit version.

_{Reviews (7): Last reviewed commit: "chore: sync skills from source repos" | Re-trigger Greptile}

[greptile-apps]

Documentation map links are broken

The new links to INFERENCE.md, CONFIGURATION_GUIDE.md, EVALUATION_METRICS.md, and SEARCH_METADATA.md resolve relative to this directory, but none of those files exists. Readers following the documentation map therefore receive file-not-found errors instead of the promised guidance; the mirrored plugin file contains the same broken links.

[greptile-apps]

Signature resources do not match

The new signature bundle records SKILL.md with SHA-256 31375d..., but the current file hashes to 39ec45.... It also requires a BENCHMARK.md that is absent from this directory. Consumers verifying this skill against the bundle will reject it because the signed resources are missing or do not match.