Evaluate MSA Structure Prediction Pipeline and OpenFold2 on NVSkills

[ohadmo]

No description provided.

[ohadmo]

@greptileai

[ohadmo]

/nvskills-ci

[greptile-apps]

Confidence Score: 5/5

The PR appears safe to merge, with no outstanding correctness, security, or repository-rule violations identified.

Summary

This PR publishes benchmark and evaluation evidence for the MSA structure-prediction pipeline and OpenFold2, synchronizes the generated skill payload, and improves the advisory SkillSpector workflow.

• Converts evaluation assertions to the current compact string representation.
• Adds benchmark reports, skill cards, and refreshed signatures.
• Scans only affected source skills on pull requests while retaining full-catalog scans on main.
• Uploads per-skill JSON reports and adds regression coverage for selection and failure handling.

Diagram

%%{init: {'theme': 'neutral'}}%%
flowchart LR
  A[Pull request changes] --> B[Compute paths since base SHA]
  B --> C[Discover authoritative source skills]
  C --> D[Select skills containing changed paths]
  D --> E[Run offline SkillSpector scan]
  E --> F[Per-skill JSON reports]
  E --> G[Markdown summary]
  F --> H[Workflow artifact]
  G --> I[GitHub step summary]
  J[Push to main] --> K[Select full source catalog]
  K --> E

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_{Reviews (3) · Last reviewed commit: "Fix SkillSpector CI to scan changed skil..."}