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Support python -m bionetgen#107

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jrfaeder merged 2 commits into
RuleWorld:mainfrom
wshlavacek:python-module-entrypoint
Jul 20, 2026
Merged

Support python -m bionetgen#107
jrfaeder merged 2 commits into
RuleWorld:mainfrom
wshlavacek:python-module-entrypoint

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@wshlavacek

@wshlavacek wshlavacek commented Jun 10, 2026

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Summary

  • add a package module entry point so python -m bionetgen invokes the existing CLI
  • add regression coverage for module help and require/help invocation

Tests

  • .venv/bin/python -m pytest tests/test_module_entrypoint.py

@jrfaeder
jrfaeder merged commit 141e07c into RuleWorld:main Jul 20, 2026
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jrfaeder pushed a commit that referenced this pull request Jul 20, 2026
…#107)

* 🧹 [code health improvement] Streamline single node graph diff parsing

* Refactored xmltodict structure handling across multiple loop domains in bionetgen/core/tools/gdiff.py.
* Cleaned up duplicated paths for single element structures resolving FIXME notes.

Co-authored-by: akutuva21 <44119804+akutuva21@users.noreply.github.com>

* chore: PR #107 remove forbidden artifacts and run black

* chore: remove accidental remediation script from PR branch

---------

Co-authored-by: google-labs-jules[bot] <161369871+google-labs-jules[bot]@users.noreply.github.com>
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2 participants