Tools developed as part of the MIT-Broad Foundry for Synthetic Biology. See contents of individual folders for information about each of the tools.
dialout-designs- Dialout process of pooled composite parts, details in: Woodruff et al. "Registry in a tube: multiplexed pools of retrievable parts for genetic design space exploration", Nucleic Acids Research 45, 1553-1565, 2017.genetic-analyzer- Characterize and debug genetic circuits using RNA-seq data, details in: Gorochowski et al. "Genetic circuit characterization and debugging using RNA-seq", Molecular Systems Biology, 2017 (in press).