fix(sqlite): require WAL reset fix

[ahrav]

Summary

• align Rust, TypeScript, fixtures, and CI on SQLite 3.51.3
• require the upstream WAL reset fix before opening direct-format databases
• keep runtime source-ID checks pinned to the supported engine

Dependency

Requires ahrav/commons#4. CI pins that commit until it merges.

Stack

Part 1 of 8. Base layer for #112.

[coderabbitai]

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📥 Commits

Reviewing files that changed from the base of the PR and between 4496cd6 and eacfad6.

⛔ Files ignored due to path filters (1)

• Cargo.lock is excluded by !**/*.lock

📒 Files selected for processing (8)

• .github/workflows/ci.yml
• Cargo.toml
• crates/mc-store/src/sqlite_runtime.rs
• crates/mc-store/tests/sqlite_runtime.rs
• packages/plugin/src/features/magic-context/fixtures/direct-format-vocabulary-v1.json
• packages/plugin/src/features/magic-context/storage-db.test.ts
• packages/plugin/src/features/magic-context/storage-format-epoch.test.ts
• packages/plugin/src/shared/sqlite.ts

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[kilo-code-bot]

Code Review Summary

Status: No Issues Found | Recommendation: Merge

Files Reviewed (9 files)

• .github/workflows/ci.yml
• Cargo.lock
• Cargo.toml
• crates/mc-store/src/sqlite_runtime.rs
• crates/mc-store/tests/sqlite_runtime.rs
• packages/plugin/src/features/magic-context/fixtures/direct-format-vocabulary-v1.json
• packages/plugin/src/features/magic-context/storage-db.test.ts
• packages/plugin/src/features/magic-context/storage-format-epoch.test.ts
• packages/plugin/src/shared/sqlite.ts

Previous Review Summary (commit a2c846f)

Current summary above is authoritative. Previous snapshots are kept for context only.

Previous review (commit a2c846f)

Status: No Issues Found | Recommendation: Merge

Files Reviewed (8 files)

• .github/workflows/ci.yml
• Cargo.lock
• Cargo.toml
• crates/mc-store/src/sqlite_runtime.rs
• crates/mc-store/tests/sqlite_runtime.rs
• packages/plugin/src/features/magic-context/fixtures/direct-format-vocabulary-v1.json
• packages/plugin/src/features/magic-context/storage-db.test.ts
• packages/plugin/src/shared/sqlite.ts

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_{Reviewed by gemini-3.7-flash · Input: 176.5K · Output: 9.5K · Cached: 257.3K}