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Calico

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  1. basenji basenji Public

    Sequential regulatory activity predictions with deep convolutional neural networks.

    Python 475 137

  2. borzoi borzoi Public

    RNA-seq prediction with deep convolutional neural networks.

    Python 267 33

  3. scBasset scBasset Public

    Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.

    Jupyter Notebook 102 13

  4. solo solo Public archive

    software to detect doublets

    Python 98 14

  5. scnym scnym Public

    Semi-supervised adversarial neural networks for classification of single cell transcriptomics data

    Python 78 13

  6. baskerville-tf baskerville-tf Public

    Machine learning methods for DNA sequence analysis.

    Python 66 18

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