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Unify output directory structure with out_app_flag=2 - #8159

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mohanchen wants to merge 12 commits into
deepmodeling:developfrom
mohanchen:2026-10-16-b
Open

Unify output directory structure with out_app_flag=2#8159
mohanchen wants to merge 12 commits into
deepmodeling:developfrom
mohanchen:2026-10-16-b

fix(md): start MD STRU numbering from 1 (like relax)

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succeeded Oct 18, 2026 in 11s