chore(master): release 4.1.0

[deeptools-releaser]

🤖 I have created a release beep boop

4.1.0 (2026-09-23)

Features

• deprecate *_old entrypoints (#1473) (dfbf3e6)
• deprecate compute/correctGCbias (#1471) (ec4fbc8)
• exit if provided number of labels doesn't match number of samples (closes #1026) (b0a2841)
• explicit check for start < end in bed (b0a2841)
• PCA drop --transpose/--centerRows as scores are default now in plotPCA (#1472) (0604617)
• script for ESS calculation (#1474) (cde2aa7)

Bug Fixes

• do not allow RPGC in bamCompare mode anymore (closes #1404) (b0a2841)
• remove np.warnings, keep ignores in the function context instead of propagating to end of function/tool (#1478) (2aab71a)

Documentation

• fix visual shift under - strand for alSieve documentation (closes #1331) (b0a2841)
• include release DOI in README (0604617)
• make contribution.md a bit more verbose (0604617)
• make sure changelog in docs reflects changelog in repo (#1469) (51e50dd)
• more verbose help on filterRNAstrand (closes #1248) (b0a2841)
• normalizeUsing in parserCommon has None explained first (closes #1311) (b0a2841)
• update ess for latest assemblies in listed table (cde2aa7)

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