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1. Palantir Palantir Public

   Single cell trajectory detection

   Jupyter Notebook 321 62

2. PhenoGraph PhenoGraph Public

   Forked from jacoblevine/PhenoGraph

   Subpopulation detection in high-dimensional single-cell data

   Python 74 30

3. Harmony Harmony Public

   Harmony framework for connecting scRNA-seq data from discrete time points

   Jupyter Notebook 54 15

4. magic magic Public

   Forked from KrishnaswamyLab/MAGIC

   MAGIC - imputation and de-noising single-cell RNA seq data sets

   Jupyter Notebook 27 12

5. seqc seqc Public

   Forked from ambrosejcarr/seqc

   Single-Cell Sequencing Quality Control and Processing Software

   Python 16 5

6. cellrank cellrank Public

   CellRank is a toolkit to uncover cellular dynamics based on Markov state modeling of single-cell data.

   3 1