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24 changes: 24 additions & 0 deletions NEWS.md
Original file line number Diff line number Diff line change
Expand Up @@ -529,6 +529,30 @@ ggRandomForests v4.0.0 (development)
reads as a measured zero. The variable keeps its row and every class
keeps its facet, and the caption says the z is undefined (#344)

* `gg_partial_varpro()` labelled categorical partials in the wrong order.
Each column of `varPro::partialpro()`'s output belongs to one value of
`$xvirtual` (sorted values, or factor levels), but the labels were taken
from the order values first appear in the sampled cases, so a 0/1
variable could have "0" and "1" swapped and a multi-level variable had
its levels shifted, whenever the two orders differed. On the PBC data
this made stage 4 and severe edema look protective. Categorical partials
are now labelled by `$xvirtual`. The `$categorical$variable` column now
holds `$xvirtual` values; code that filtered it against values taken
from `$xorg` should be checked (#350)

* Add the vignette "varPro on small or sparse data": which variables
varPro actually tested, what a z of zero means, how much the trim and
the 0.79 cutoff change the answer, checking a screen against noise, and
partial dependence on small data. Document the same points in
`?gg_varpro`, `?gg_partial_varpro` (a factor is partialled one level at
a time, by its one-hot names; the spread is not a confidence interval)
and `?gg_partial_rfsrc` (horizons before the first event all return the
first event's curve) (#351)

* Tests now cover `varpro_coverage()` on a classification fit and its
error branches: an encoding map that misses a term, and a multivariate
regression fit (#347)

ggRandomForests v3.5.2
======================
* Three help pages no longer render a stray backslash where a percent sign
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1 change: 0 additions & 1 deletion news/docs-varpro-small-data.md

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1 change: 0 additions & 1 deletion news/fix-varpro-categorical-labels.md

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1 change: 0 additions & 1 deletion news/test-varpro-coverage-error-branches.md

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