feat(presets): support regex resource selectors

src/specify_cli/extensions/_commands.py

@@ -5,6 +5,7 @@
 re-fetch package helpers at call time so existing monkeypatch paths keep
 working. Cohesive private phases use ``_command_<name>_*.py`` modules.
 """
+
 from __future__ import annotations
 
 import errno
@@ -34,25 +35,30 @@
     add_completion=False,
 )
 
+
 # Root helpers re-fetched at call time so test monkeypatching of
 # `specify_cli.<name>` keeps working after the move.
 def _require_specify_project(*args, **kwargs):
     from .. import _require_specify_project as _f
+
     return _f(*args, **kwargs)
 
 
 def _locate_bundled_extension(*args, **kwargs):
     from .. import _locate_bundled_extension as _f
+
     return _f(*args, **kwargs)
 
 
 def load_init_options(*args, **kwargs):
     from .. import load_init_options as _f
+
     return _f(*args, **kwargs)
 
 
 def _display_project_path(*args, **kwargs):
     from .. import _display_project_path as _f
+
     return _f(*args, **kwargs)
 
 
@@ -97,6 +103,34 @@ def _archive_extension_directory(*args, **kwargs):
     return _helper(*args, **kwargs)
 
 
+def _refresh_presets_and_warn(project_root: Path) -> None:
+    """Re-register enabled preset overrides after extension stack changes.
+
+    Preset regex selectors expand against currently available lower layers, so
+    installing, removing, enabling, disabling, or reprioritizing an extension
+    can change which concrete command declarations are materialized. Keep the
+    normal preset enablement and active-integration rules by using its existing
+    integration-switch registration path.
+    """
+    try:
+        from .._init_options import load_init_options
+        from ..presets import PresetManager
+
+        agent = load_init_options(project_root).get("ai")
+        if agent:
+            PresetManager(project_root).register_enabled_presets_for_agent(agent)
+    except Exception as exc:
+        from .. import _print_cli_warning
+
+        _print_cli_warning(
+            "reconcile preset artifacts after extension change",
+            "project",
+            str(project_root),
+            exc,
+            continuing="Continuing; run 'specify integration use' to retry registration.",
+        )
+
+
 def _refresh_events_and_warn(project_root: Path) -> None:
     """Refresh native event config and surface failures (R3).
 
@@ -146,9 +180,7 @@ def install_extension_from_url(
     from . import ExtensionCatalog, ExtensionError
 
     if not is_https_or_localhost_http(url):
-        raise ExtensionError(
-            "URL must use HTTPS (HTTP is only allowed for localhost)"
-        )
+        raise ExtensionError("URL must use HTTPS (HTTP is only allowed for localhost)")
 
     download_dir = _validate_safe_cache_dir(project_root)
     archive_filename = f"extension-url-download-{uuid4().hex}.archive"
@@ -209,9 +241,7 @@ def install_extension_from_url(
             ) from exc
 
         format_source = (
-            final_url
-            if archive_format_from_name(final_url) is not None
-            else url
+            final_url if archive_format_from_name(final_url) is not None else url
         )
         try:
             detect_archive_format(
@@ -282,7 +312,9 @@ def _resolve_installed_extension(
             return (ext["id"], ext["name"])
 
     # If not found by ID, try display name match
-    name_matches = [ext for ext in installed_extensions if ext["name"].lower() == argument.lower()]
+    name_matches = [
+        ext for ext in installed_extensions if ext["name"].lower() == argument.lower()
+    ]
 
     if len(name_matches) == 1:
         # Unique display-name match
@@ -311,7 +343,9 @@ def _resolve_installed_extension(
         # No match by ID or display name
         if allow_not_found:
             return (None, None)
-        console.print(f"[red]Error:[/red] Extension '{_escape_markup(argument)}' is not installed")
+        console.print(
+            f"[red]Error:[/red] Extension '{_escape_markup(argument)}' is not installed"
+        )
         raise typer.Exit(1)
 
 
@@ -375,7 +409,9 @@ def _resolve_catalog_extension(
                 )
             console.print(table)
             console.print("\nPlease rerun using the extension ID:")
-            console.print(f"  [bold]specify extension {command_name} <extension-id>[/bold]")
+            console.print(
+                f"  [bold]specify extension {command_name} <extension-id>[/bold]"
+            )
             raise typer.Exit(1)
 
         # Not found
@@ -432,9 +468,7 @@ def _verify_leaf_identity(fd: int, path: Path) -> None:
         or path_stat.st_dev != open_stat.st_dev
         or path_stat.st_ino != open_stat.st_ino
     ):
-        raise OSError(
-            errno.ENOTDIR, "Download file changed between creation and open"
-        )
+        raise OSError(errno.ENOTDIR, "Download file changed between creation and open")
 
 
 def _validate_safe_cache_dir(project_root: Path) -> Path:
@@ -568,9 +602,7 @@ def _safe_open_download_zip(
     classes on every supported platform.
     """
     if _has_secure_dir_fd():
-        return _open_download_zip_via_dir_fd(
-            project_root, download_dir, zip_filename
-        )
+        return _open_download_zip_via_dir_fd(project_root, download_dir, zip_filename)
     return _open_download_zip_via_paths(project_root, download_dir, zip_filename)
 
 
@@ -623,15 +655,15 @@ def _open_download_zip_via_paths(
     project_root_resolved = project_root.resolve()
 
     if download_dir.is_symlink() or not download_dir.is_dir():
-        raise OSError(
-            errno.ENOTDIR, "Download cache directory is not a real directory"
-        )
+        raise OSError(errno.ENOTDIR, "Download cache directory is not a real directory")
     try:
         download_dir.resolve().relative_to(project_root_resolved)
     except (OSError, ValueError):
         raise OSError(errno.ENOTDIR, "Download cache directory escapes project root")
     if zip_path.is_symlink():
-        raise OSError(errno.ELOOP, "Refusing to write through a symlinked download file")
+        raise OSError(
+            errno.ELOOP, "Refusing to write through a symlinked download file"
+        )
 
     flags = os.O_RDWR | os.O_CREAT | os.O_EXCL
     flags |= getattr(os, "O_NOFOLLOW", 0)