Repository navigation
Conversation
…nner - Pluggable LLM backends (backends.py): Gemini and OpenAI-compatible servers (vLLM), selectable per student; google-genai is now an optional extra. Non-retryable API errors (e.g. context overflow) end the student's attempt instead of crashing the run; Qwen-style reasoning blocks are stripped. - TaskEnvironment seam (environments.py) threaded through the learning cycle and final evaluation; the upstream DataFrame path is unchanged. - PyHealth environments (pyhealth_env/): students write solution(train_dataset, val_dataset, device) -> model; each attempt trains in a fresh subprocess on a GPU slot (GpuPool) and is scored on a held-out patient-level split. Built-in MIMIC-III/IV and eICU specs, reuse of cached SampleDatasets, prompts with a real-batch schema table plus PyHealth Trainer and custom BaseModel templates. - Headless runner (scripts/run_classroom.py, run.py, configs/): YAML configs with dotted overrides; notebook/Colab/Plotly code removed. - pyproject: repro extra pinning the classroom env used for reported results, separate vllm-server extra, explicit package discovery. - README: two-env setup, install pitfalls, vLLM recipes for RTX 2080 Ti and A6000, and reference MIMIC-IV mortality results (Qwen3.5-9B-AWQ students: test AUROC 0.785-0.792 vs 0.781 for the PyHealth RNN baseline). Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
|
Thanks for your pull request! It looks like this may be your first contribution to a Google open source project. Before we can look at your pull request, you'll need to sign a Contributor License Agreement (CLA). View this failed invocation of the CLA check for more information. For the most up to date status, view the checks section at the bottom of the pull request. |
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
…nner