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doc
doc
 
 
HOW_TO_USER_STRIDE_FOR_CONTACT_ORDER_CALCULATIONS
HOW_TO_USER_STRIDE_FOR_CONTACT_ORDER_CALCULATIONS
 
 
Makefile
Makefile
 
 
README.md
README.md
 
 
area.c
area.c
 
 
asngener.c
asngener.c
 
 
chk_atom.c
chk_atom.c
 
 
chk_res.c
chk_res.c
 
 
chkchain.c
chkchain.c
 
 
command.c
command.c
 
 
contact_map.c
contact_map.c
 
 
contact_order.c
contact_order.c
 
 
die.c
die.c
 
 
dssp.c
dssp.c
 
 
elem.c
elem.c
 
 
escape.c
escape.c
 
 
filename.c
filename.c
 
 
fillasn.c
fillasn.c
 
 
geometry.c
geometry.c
 
 
hbenergy.c
hbenergy.c
 
 
helix.c
helix.c
 
 
hydrbond.c
hydrbond.c
 
 
initchn.c
initchn.c
 
 
measure.c
measure.c
 
 
memory.c
memory.c
 
 
mergepat.c
mergepat.c
 
 
molscr.c
molscr.c
 
 
nsc.c
nsc.c
 
 
nsc.h
nsc.h
 
 
one2thr.c
one2thr.c
 
 
outseq.c
outseq.c
 
 
p_atom.c
p_atom.c
 
 
p_compnd.c
p_compnd.c
 
 
p_endmdl.c
p_endmdl.c
 
 
p_expdta.c
p_expdta.c
 
 
p_helix.c
p_helix.c
 
 
p_jrnl.c
p_jrnl.c
 
 
p_model.c
p_model.c
 
 
p_rem.c
p_rem.c
 
 
p_sheet.c
p_sheet.c
 
 
p_ssbond.c
p_ssbond.c
 
 
p_turn.c
p_turn.c
 
 
pdb1fmc.pdb
pdb1fmc.pdb
 
 
pdb1mjh.pdb
pdb1mjh.pdb
 
 
pdb1res.pdb
pdb1res.pdb
 
 
pdb2btm.pdb
pdb2btm.pdb
 
 
pdbasn.c
pdbasn.c
 
 
phipsi.c
phipsi.c
 
 
place_h.c
place_h.c
 
 
protot.h
protot.h
 
 
rdmap.c
rdmap.c
 
 
rdpdb.c
rdpdb.c
 
 
report.c
report.c
 
 
sheet.c
sheet.c
 
 
splitstr.c
splitstr.c
 
 
ssbond.c
ssbond.c
 
 
stred.c
stred.c
 
 
stride
stride
 
 
stride.c
stride.c
 
 
stride.h
stride.h
 
 
stride.tar.gz
stride.tar.gz
 
 
strutil.c
strutil.c
 
 
thr2one.c
thr2one.c
 
 
tolostr.c
tolostr.c
 
 
turn.c
turn.c
 
 

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STRIDE

STRIDE is a sotware for protein secondary structure assignment based on 3D structures as input.

The software has been described in this publication:

Frishman D, Argos P. Knowledge-Based Protein Secondary Structure Assignment Proteins: Structure, Function, and Genetics 23:566-579 (1995)

An interactive webserver is available here:

http://stride.helmholtz-munich.de/cgi-bin/stride/stridecgi.py

Building from source

The code is written in C and needs the gcc compiler to build the binary.

To comile the code please use

git clone https://github.com/heiniglab/stride.git
cd stride
make stride

Then copy the binary to a place that is in your execution path or use it locally.

User documentation

doc/

License note

Please note that all source code contains license information. The following exception is in place for the license of the NSC software: NSC is free for all in the special case if the NSC program is used, copied or in any form applied as integral part of STRIDE and only in this context.

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STRIDE protein secondary structure assignment

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