All pull requests

Pull requests

• feat(nextclade): embl flat file - trim cds ranges with premature stop codon

  preprocessing
  #7439·anna-parker opened Sep 28, 2026Contributor·

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  1

• feat(website): Update search table file columns UI and disable sorting of file columns

  website
  #7438·tombch opened Sep 28, 2026Collaborator·

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  1

  3

• fix(config): Switch to substring search for files columns

  deployment
  #7437·tombch opened Sep 28, 2026Collaborator·

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  3

• feat(nextclade): embl flat file annotations - mark CDS with premature stop codons are pseudo

  preprocessing
  #7436·anna-parker opened Sep 28, 2026Contributor·

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  18

• DON'T MERGE: query engine review fixes preview (stacked on #7431)

  backenddeploymentdon't mergepreviewupdate_db_schema
  #7435·corneliusroemer-agent opened Sep 28, 2026Collaborator·

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• fix(taxonomy): accept NCBI synonyms and common names as hosts, strip whitespace

  preprocessing
  #7433·corneliusroemer-agent opened Sep 28, 2026Collaborator·

  ·
  1

• query experiments, not to merge

  backendpreview
  #7431·theosanderson opened Sep 27, 2026Member·

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  1

• ci(integration-tests): retry firefox tests only after a browser crash, and record why it died

  #7430·corneliusroemer-agent opened Sep 27, 2026Collaborator·

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  4

• fix(kubernetes): allow extra Keycloak env vars, disable the gzip resource encoder in e2e/dev

  deploymente2ekeycloak
  #7429·corneliusroemer-agent opened Sep 27, 2026Collaborator·

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  2

• ci(ena-submission): fail fast with an explanation when ENA secrets are missing

  #7428·corneliusroemer-agent opened Sep 27, 2026Collaborator·

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  2

• perf(website): load review card data in one request

  backendpreviewwebsite
  #7427·clonder opened Sep 27, 2026Contributor·

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  5

• feat: add opt-in restricted instance access

  backenddeploymentpreviewwebsite
  #7426·snehasaisneha opened Sep 27, 2026Member·

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  2

• test(deployment): rehearse OIDC upgrade on a persistent preview

  deploymentpreview
  #7424·snehasaisneha opened Sep 26, 2026Member·

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• fix/refactor(website): sequence upload fixes: accept re-dropped files with the same fastaID, don't show rejected files, and undo restores the original header/label

  website
  #7420·tombch opened Sep 25, 2026Collaborator·

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  2

• feat!(prepro): validate user-submitted external accessions

  deploymentdepositionpreprocessing
  #7413·maverbiest opened Sep 24, 2026Contributor·

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  1

  7

• feat(deposition): derive raw reads library fields from sequencingApproach

  preprocessing
  #7411·theosanderson-agent opened Sep 24, 2026Collaborator·

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  2

• feat(website): visual polish for homepage, search page, sequence details, API docs and 404

  previewwebsite
  #7404·theosanderson-agent opened Sep 23, 2026Collaborator·

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  8

• chor(raw-reads-processing): hide warnings

  preprocessing
  #7396·anna-parker opened Sep 23, 2026Contributor·

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  1

  3

• ci(integration-tests): run Playwright with 3 workers instead of 2, allowlist unused keycloak font 404

  #7393·corneliusroemer-agent opened Sep 23, 2026Collaborator·

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  5

• fix(pepro): fall back to per-sequence nextclade if batch fails

  preprocessing
  #7385·maverbiest opened Sep 22, 2026Contributor·

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  1

  9

• feat(prepro): handle exceptions thrown in enrich_with_nextclade gracefully

  preprocessing
  #7379·anna-parker opened Sep 21, 2026Contributor·

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  1

  15

• ci(deployment): mirror external container images to GHCR

  backenddeploymentgithub_actions
  #7363·clonder opened Sep 20, 2026Contributor·

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  1

  10

• Do Not Merge: PR to explore what needs changing to put the data behind authentication

  backenddeploymentwebsite
  #7362·rneher opened Sep 19, 2026Contributor·

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  13

• fix(preprocessing): clarify invalid host errors and show them when editing

  preprocessingwebsite
  #7353·theosanderson-agent opened Sep 18, 2026Collaborator·

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  1

  1

• fix(website): remove presigned URL from toast error

  website
  #7352·tombch opened Sep 18, 2026Collaborator·

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  5