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Pull requests: nf-core/modules

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Pull requests list

Added option to pass on custom arguments to rastair modules size/xs
#12349 opened Jul 13, 2026 by eduard-watchmaker Contributor Loading…
17 tasks
1
updated test evaluation strategy - check for getReadsMD5, instead of getREADs using the nf-bam plugin to avoid linting conflicts.
#12348 opened Jul 13, 2026 by Kevin-Brockers Contributor Loading…
6 tasks done
1
7
Add rclone check and checksum modules
#12346 opened Jul 10, 2026 by delfiterradas Contributor Loading…
17 tasks
@delfiterradas
2
Add rclone copy Ready for Review
#12337 opened Jul 9, 2026 by antoniasaracco Contributor Loading…
10
Fix strict syntax in utils_* subworkflows
#12329 opened Jul 9, 2026 by itrujnara Contributor Loading…
2 of 4 tasks
6
Swap strelka to topic channels size/m
#12290 opened Jul 8, 2026 by SPPearce Contributor • Draft
Swap svtyper to topics size/m
#12284 opened Jul 8, 2026 by SPPearce Contributor • Draft
feat (closes #7246): add new component: leafcutter/differentialsplicing
#12271 opened Jul 7, 2026 by JTL-lab Contributor Loading…
14 of 17 tasks
1
Swap verifybamid to topic size/m
#12262 opened Jul 7, 2026 by SPPearce Contributor Loading…
3
Update to topic metaspace/*
#12247 opened Jul 6, 2026 by LouisLeNezet Contributor Loading…
17 tasks
2
@LouisLeNezet
1
Update to topic metamaps/*
#12246 opened Jul 6, 2026 by LouisLeNezet Contributor Loading…
17 tasks
2
@LouisLeNezet
4
new module: fastaguard awaiting-changes will be closed after 30 days
#12239 opened Jul 3, 2026 by ehsanestaji Contributor Loading…
14 of 15 tasks
9
Add new subworkflow: ubam_align_minimap2 Ready for Review
#12238 opened Jul 3, 2026 by manascripts Member Loading…
7 of 17 tasks
Update deacon module awaiting-changes will be closed after 30 days draft
#12236 opened Jul 3, 2026 by sofstam Contributor Loading…
17 tasks
Add subworkflow: fastq_align_minimap2 Ready for Review size/m
#12235 opened Jul 3, 2026 by manascripts Member Loading…
8 of 17 tasks
gstama_polyacleanup: Fixed regression - Fixing output glob awaiting-changes will be closed after 30 days
#12228 opened Jul 2, 2026 by sguizard Contributor Loading…
3
Add ciri2 module draft
#12224 opened Jul 1, 2026 by razmia02 • Draft
17 tasks
Added nf-core module presto/pairseq Ready for Review
#12222 opened Jul 1, 2026 by Vivian0105 Contributor Loading…
17 tasks
2
Seqkit replace - fix #9647 and #9646 awaiting-changes will be closed after 30 days
#12213 opened Jul 1, 2026 by ammaraziz Contributor Loading…
1
1
Update: pangolin modules awaiting-changes will be closed after 30 days
#12211 opened Jul 1, 2026 by ammaraziz Contributor Loading…
6
Update dependency nextflow-io/nextflow to v25.10.6 size/xs
#12210 opened Jul 1, 2026 by renovate Bot Loading…
2 tasks
Update dotnet monorepo size/xs
#12209 opened Jul 1, 2026 by renovate Bot Loading…
2 tasks
Pin nvcr.io/nvidia/tensorflow Docker tag to 9206ed8 size/xs
#12208 opened Jul 1, 2026 by renovate Bot Loading…
2 tasks
feat: add vcontact3/run module awaiting-changes will be closed after 30 days
#12198 opened Jun 30, 2026 by JP-Bro Contributor Loading…
6 tasks done
1
14
Add new module: caddsv/run Ready for Review
#12189 opened Jun 29, 2026 by manascripts Member Loading…
12 of 17 tasks
1
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