mchernyshev/milab 6862 hilary

[mchernys]

Greptile Summary

The PR replaces the dedicated HILARy environment approach by adding HILARy and its missing pure-Python dependencies to the existing Python 3.12.10 environment, with corresponding release metadata.

• Adds pinned hilary, structlog, textdistance, and typer packages.
• Adds minor changesets for the Python 3.12.10 environment and aggregate catalogue package.
• Documents package-resolution behavior, platform constraints, artifact-size rationale, and verification performed.
• Important touched terms:
  • HILARy — A clonal-lineage clustering package used by the Lineage Trees block; newly included in the base Python 3.12.10 environment.
  • Run environment — A packaged Python interpreter and wheel collection consumed by blocks; the existing 3.12.10 environment now carries HILARy instead of introducing a dedicated variant.
  • atriegc — HILARy’s compiled trie-search dependency; already present in the base environment and unchanged by this PR.
  • forceSource — Builder configuration that retains a source distribution for a platform lacking a wheel; unchanged, but documented as relevant to atriegc on Linux ARM64.
  • Changeset — Release metadata controlling package version increments; this PR requests minor releases for the affected environment and catalogue packages.

Confidence Score: 5/5

The current changes appear safe to merge, with no newly established actionable defect.

The added package pins match the intended HILARy integration, and no concrete dependency-resolution or release-tooling failure was established. The earlier atriegc finding was manually resolved without explanation and is therefore not outstanding.

Important Files Changed

Filename	Overview
python-3.12.10/config.json	Adds HILARy 1.2.4 and three pinned pure-Python dependencies to the base Python 3.12.10 wheel set.
.changeset/hilary-packages.md	Records the package releases and explains dependency, platform, size, resolution, and verification considerations.

_{Reviews (2): Last reviewed commit: "MILAB-6862: add hilary and its deps to t..." | Re-trigger Greptile}

[mchernys]

@greptile