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sgkit zarr 3 migration - #1362

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jpfeuffer wants to merge 7 commits into

sgkit-dev:mainfrom

jpfeuffer:jpfeuffer-sgkit-zarr-3-migration

Open

sgkit zarr 3 migration#1362
jpfeuffer wants to merge 7 commits into
sgkit-dev:mainfrom
jpfeuffer:jpfeuffer-sgkit-zarr-3-migration

Commits on Oct 15, 2026
- Require Zarr Python 3 and modern Xarray
  
  jpfeuffer
  and
  Copilot
  committed
  6f3fb55
Commits on Oct 16, 2026
- Remove legacy BGEN conversion and document bio2zarr migration
  
  jpfeuffer
  and
  Copilot
  committed
  e18e9f5
- Decouple legacy BGEN dataset unpacking from cbgen
  
  jpfeuffer
  and
  Copilot
  committed
  402cca5
- Remove native BGEN reader and cbgen dependency
  
  jpfeuffer
  and
  Copilot
  committed
  8b7f895
- Document BGEN migration under changelog deprecations
  
  jpfeuffer
  and
  Copilot
  committed
  aed7547
- Remove redundant BGEN wheel smoke assertions
  
  jpfeuffer
  and
  Copilot
  committed
  7c72e2c
- Fix strict docs links and Zarr 3 legacy-store CI tests
  
  jpfeuffer
  and
  Copilot
  committed
  e014ffb