entity-trajectory

PyRod - Tracing water molecules in molecular dynamics simulations

🏗️ Statistical models for biomolecular dynamics 🏗️

OpenMM is a toolkit for molecular simulation using high performance GPU code.

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

A pocket volume analyzer for use in protein modeling.

Public development project of the LAMMPS MD software package

End-To-End Molecular Dynamics (MD) Engine using PyTorch

WebGL protein viewer

Detect and characterize binding pockets from molecular simulations.

Solvation Structure and Thermodynamic Mapping

MD pharmacophores and virtual screening

Differentiable, Hardware Accelerated, Molecular Dynamics

Powerful, efficient particle trajectory analysis in scientific Python.

Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation

An open library for the analysis of molecular dynamics trajectories

MDAnalysis is a Python library to analyze molecular dynamics simulations.

Dynamic pharmacophore modeling of molecular interactions

Fast and All atom Protein-Ligand Interaction Profiler

A comprehensive macromolecular library

🚂 Python API for Emma's Markov Model Algorithms 🚂