phylotranscriptomics

Here are 4 public repositories matching this topic...

edgardomortiz / Captus

Assembly of Phylogenomic Datasets from High-Throughput Sequencing data

bioinformatics rna-seq ngs next-generation-sequencing phylogenetics alignment high-throughput-sequencing hybridization-capture phylogenomics whole-genome-sequencing orthologs busco paralogs genome-skimming phylotranscriptomics target-capture

Updated Aug 12, 2026
Python

JuseTiZ / PyScript-for-CT

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Python scripts for CT(comparative transcriptomics), PT(phylotranscriptomics) and CG(comparative genomics).

comparative-genomics phylotranscriptomics comparative-transcriptomics

Updated Aug 24, 2024
Python

oggmap is a python package to extract orthologous maps (short: orthomap or in other words the evolutionary age of a given orthologous group) from OrthoFinder/eggNOG results. Oggmap results (gene ages per orthologous group) can be further used to calculate weigthed expression data (transcriptome evolutionary index) from scRNA sequencing objects.

evolution transcriptomics phylogeny single-cell-analysis phylotranscriptomics evomed

Updated Apr 2, 2025
Python

JuseTiZ / JuseKit

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JUst a SEquence toolKIt for Transcriptomics, provides convenient visual interactive operations for related analysis

phylotranscriptomics comparative-transcriptomics

Updated Jul 15, 2024
Python

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