Aligns short reads using dynamic seed size with strobemers
-
Updated
Sep 9, 2026 - C++
#
strobemers
Here are 7 public repositories matching this topic...
Long-read splice alignment with high accuracy
-
Updated
Sep 26, 2024 - Python
BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important applications: 1) finding overlapping reads and 2) read mapping. Described by Firtina et al. (published in NARGAB https://doi.org/10.1093/nargab/lqad004)
bioinformatics genome-analysis genome-assembly blend read-mapping de-novo-assembly minimizers strobemers seed-matching fuzzy-seeds read-overlapping spaced-seeds
-
Updated
May 10, 2023 - C
A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
-
Updated
Apr 23, 2021 - Go
Rust implementation of strobemer generation (MinStrobes, RandStrobes). Streaming iterators produce 64-bit strobemer hashes over DNA/RNA sequences.
-
Updated
Jul 25, 2025 - Rust
Benchmarking pre-filtering large databases before short-read mapping
-
Updated
Aug 9, 2024 - Python
Rust implementation of alignment-free similarity estimation methods.
-
Updated
Aug 25, 2024 - Rust
Add this topic to your repo
To associate your repository with the strobemers topic, visit your repo's landing page and select "manage topics."